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release number bump
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William McLaren committed Sep 22, 2016
1 parent bf425db commit 5c5580f
Showing 1 changed file with 24 additions and 24 deletions.
48 changes: 24 additions & 24 deletions plugin_config.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ my $VEP_PLUGIN_CONFIG = {
"enabled" => 0,
"section" => "Pathogenicity predictions",
"helptip" => "dbNSFP provides pathogenicity predictions for missense variants from various algorithms",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/dbNSFP.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/dbNSFP.pm",
"requires_data" => 1,
"requires_install" => 1,
"params" => [
Expand Down Expand Up @@ -175,7 +175,7 @@ my $VEP_PLUGIN_CONFIG = {
"enabled" => 0,
"section" => "Pathogenicity predictions",
"helptip" => "Combined Annotation Dependent Depletion (CADD) is a tool for scoring the deleteriousness of single nucleotide variants and insertion/deletion variants in the human genome. CADD integrates multiple annotations into one metric by contrasting variants that survived natural selection with simulated mutations.",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/CADD.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/CADD.pm",
"requires_data" => 1,
"species" => [
"homo_sapiens"
Expand All @@ -197,7 +197,7 @@ my $VEP_PLUGIN_CONFIG = {
"enabled" => 0,
"section" => "Pathogenicity predictions",
"helptip" => "FATHMM-MKL predicts functional consequences of variants, both coding and non-coding.",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/FATHMM_MKL.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/FATHMM_MKL.pm",
"requires_data" => 1,
"species" => [
"homo_sapiens"
Expand Down Expand Up @@ -251,7 +251,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Pathogenicity predictions",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/Carol.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/Carol.pm",
"requires_install" => 1,
"species" => [
"homo_sapiens"
Expand All @@ -269,7 +269,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Pathogenicity predictions",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/Condel.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/Condel.pm",
"requires_install" => 1,
"species" => [
"homo_sapiens"
Expand Down Expand Up @@ -317,7 +317,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Pathogenicity predictions",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/LoFtool.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/LoFtool.pm",
"requires_data" => 1,
"species" => [
"homo_sapiens"
Expand All @@ -339,7 +339,7 @@ my $VEP_PLUGIN_CONFIG = {
"enabled" => 0,
"section" => "Splicing predictions",
"helptip" => "Retrieves data for splicing variants from a tabix-indexed dbscSNV file",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/dbscSNV.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/dbscSNV.pm",
"requires_data" => 1,
"requires_install" => 1,
"params" => [
Expand All @@ -358,7 +358,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Splicing predictions",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/GeneSplicer.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/GeneSplicer.pm",
"requires_install" => 1,
"species" => [
"homo_sapiens"
Expand All @@ -378,7 +378,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Splicing predictions",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/MaxEntScan.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/MaxEntScan.pm",
"requires_install" => 1,
"species" => [
"homo_sapiens"
Expand All @@ -400,7 +400,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Conservation",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/Blosum62.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/Blosum62.pm",
},

# Conservation
Expand All @@ -422,7 +422,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Conservation",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/Conservation.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/Conservation.pm",
"params" => [
"@*"
],
Expand Down Expand Up @@ -460,7 +460,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Identifiers",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/CSN.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/CSN.pm",
},

# HGVSshift
Expand All @@ -471,7 +471,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"section" => "Identifiers",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/HGVSshift.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/HGVSshift.pm",
},


Expand All @@ -485,7 +485,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Reports allele frequencies from the Exome Aggregation Consortium",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/ExAC.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/ExAC.pm",
"section" => "Frequency data",
"requires_data" => 1,
"species" => [
Expand All @@ -507,7 +507,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Determines where in the secondary structure of a miRNA a variant falls",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/miRNA.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/miRNA.pm",
},


Expand All @@ -520,7 +520,7 @@ my $VEP_PLUGIN_CONFIG = {
"available" => 0,
"enabled" => 0,
"helptip" => "Change the distance to transcript (default is 5000bp) for which VEP assigns upstream and downstream consequences",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/UpDownDistance.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/UpDownDistance.pm",
"params" => [
"@*"
],
Expand All @@ -541,7 +541,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Finds the nearest gene to non-genic variants",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/NearestGene.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/NearestGene.pm",
},

# LD
Expand All @@ -551,7 +551,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Finds variants in linkage disequilibrium with any overlapping existing variants from the Ensembl variation databases",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/LD.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/LD.pm",
"section" => "Variant data",
"params" => [
"@*"
Expand Down Expand Up @@ -607,7 +607,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Reports existing variants that fall in the same codon",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/SameCodon.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/SameCodon.pm",
"section" => "Variant data",
},

Expand All @@ -618,7 +618,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Retrieves Gene Ontology terms associated with transcripts/translations via the Ensembl API",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/GO.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/GO.pm",
"section" => "Gene data",
},

Expand All @@ -629,7 +629,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Reports data from the Gene Expression Atlas",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/GXA.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/GXA.pm",
"section" => "Gene data",
},

Expand All @@ -640,7 +640,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Predicts the downstream effects of a frameshift variant on the protein sequence of a transcript",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/Downstream.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/Downstream.pm",
},

# ProteinSeqs
Expand All @@ -650,7 +650,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Prints out the reference and mutated protein sequences of any proteins found with non-synonymous mutations",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/ProteinSeqs.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/ProteinSeqs.pm",
},

# TSSDistance
Expand All @@ -660,7 +660,7 @@ my $VEP_PLUGIN_CONFIG = {
"helptip" => "Calculates the distance from the transcription start site for upstream variants ",
"available" => 0,
"enabled" => 0,
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/85/TSSDistance.pm",
"plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/86/TSSDistance.pm",
},
]
};

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