update to 89

dglemos · May 22, 2017 · 59b634e · 59b634e
1 parent 27dc65b
commit 59b634e
Showing 1 changed file with 27 additions and 27 deletions.
diff --git a/plugin_config.txt b/plugin_config.txt
@@ -16,7 +16,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "dbNSFP provides pathogenicity predictions for missense variants from various algorithms",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/dbNSFP.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/dbNSFP.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -239,7 +239,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "Combined Annotation Dependent Depletion (CADD) is a tool for scoring the deleteriousness of single nucleotide variants and insertion/deletion variants in the human genome. CADD integrates multiple annotations into one metric by contrasting variants that survived natural selection with simulated mutations.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/CADD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/CADD.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -261,7 +261,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "FATHMM-MKL predicts functional consequences of variants, both coding and non-coding.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/FATHMM_MKL.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/FATHMM_MKL.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -315,7 +315,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Carol.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Carol.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -333,7 +333,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Condel.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Condel.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -364,7 +364,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/PolyPhen_SIFT.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/PolyPhen_SIFT.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -398,7 +398,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/LoFtool.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/LoFtool.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -416,7 +416,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ExACpLI.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ExACpLI.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -439,7 +439,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Splicing predictions",
       "helptip" => "Retrieves data for splicing variants from a tabix-indexed dbscSNV file",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/dbscSNV.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/dbscSNV.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -458,7 +458,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GeneSplicer.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GeneSplicer.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -478,7 +478,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/MaxEntScan.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/MaxEntScan.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -496,7 +496,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/SpliceRegion.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/SpliceRegion.pm",
     },
 
 
@@ -511,7 +511,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Blosum62.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Blosum62.pm",
     },
 
     # Conservation
@@ -533,7 +533,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Conservation.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Conservation.pm",
       "params" => [
         "@*"
       ],
@@ -571,7 +571,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/CSN.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/CSN.pm",
     },
 
     # HGVSshift
@@ -582,7 +582,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/HGVSshift.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/HGVSshift.pm",
     },
 
 
@@ -596,7 +596,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports allele frequencies from the Exome Aggregation Consortium",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ExAC.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ExAC.pm",
       "section" => "Frequency data",
       "requires_data" => 1,
       "species" => [
@@ -618,7 +618,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Determines where in the secondary structure of a miRNA a variant falls",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/miRNA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/miRNA.pm",
     },
 
 
@@ -631,7 +631,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "helptip" => "Change the distance to transcript (default is 5000bp) for which VEP assigns upstream and downstream consequences",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/UpDownDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/UpDownDistance.pm",
       "params" => [
         "@*"
       ],
@@ -652,7 +652,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds the nearest gene to non-genic variants",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/NearestGene.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/NearestGene.pm",
     },
 
     # LD
@@ -662,7 +662,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds variants in linkage disequilibrium with any overlapping existing variants from the Ensembl variation databases",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/LD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/LD.pm",
       "section" => "Variant data",
       "params" => [
         "@*"
@@ -718,7 +718,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports existing variants that fall in the same codon",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/SameCodon.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/SameCodon.pm",
       "section" => "Variant data",
     },
 
@@ -729,7 +729,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Retrieves Gene Ontology terms associated with transcripts/translations via the Ensembl API",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GO.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GO.pm",
       "section" => "Gene data",
     },
 
@@ -740,7 +740,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports data from the Gene Expression Atlas",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GXA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GXA.pm",
       "section" => "Gene data",
     },
 
@@ -751,7 +751,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Predicts the downstream effects of a frameshift variant on the protein sequence of a transcript",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Downstream.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Downstream.pm",
     },
 
     # ProteinSeqs
@@ -761,7 +761,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Prints out the reference and mutated protein sequences of any proteins found with non-synonymous mutations",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ProteinSeqs.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ProteinSeqs.pm",
     },
 
     # TSSDistance
@@ -771,7 +771,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Calculates the distance from the transcription start site for upstream variants   ",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/TSSDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/TSSDistance.pm",
     },
   ]
 };