Fix #262

README.md

@@ -157,6 +157,8 @@ docker run -ti --rm \
 
 `-uniteSections`: Write all HTML sections into a single HTML document.
 
+`-noPlaceHolderText`: Do not add any placeholder text (this will remove intro, abstract (if empty) and description sections).
+
 `--help`: Shows a help message and exits.
 
 

src/main/java/widoco/Configuration.java

@@ -184,8 +184,7 @@ public final void initializeConfig() {
 		displayDirectImportsOnly = false;
 		rewriteBase = "/";
 		contextURI = "";
-                //BY DEFAULT SHOULD BE FALSE
-                includeAllSectionsInOneDocument = true;
+		includeAllSectionsInOneDocument = false;
 		initializeOntology();
 	}
 
@@ -221,6 +220,8 @@ private void initializeOntology() {
 		mainOntologyMetadata.setDoi("");
 		mainOntologyMetadata.setStatus("");
 		mainOntologyMetadata.setBackwardsCompatibleWith("");
+		mainOntologyMetadata.setIncompatibleWith("");
+		mainOntologyMetadata.setImages(new ArrayList<>());
 		this.namespaceDeclarations = new HashMap<>();
 	}
 
@@ -368,6 +369,7 @@ private void loadPropertyFile(String path) throws IOException {
 				mainOntologyMetadata.addSerialization("JSON-LD", serializationJSONLD);
 			}
 			this.googleAnalyticsCode = propertyFile.getProperty("GoogleAnalyticsCode");
+			//TO DO: There is missing metadata here (incompatible, images, backwards compatibility)
 
 		} catch (IOException ex) {
 			// Only a warning, as we can continue safely without a property file.
@@ -587,13 +589,11 @@ private void completeOntologyMetadata(OWLAnnotation a, OWLOntology o) {
 					if (!a.getValue().asAnonymousIndividual().isEmpty()){
 						// dealing with a blank node, extract metadata from URL, name and organization (if available)
 						o.getAnnotationAssertionAxioms(a.getValue().asAnonymousIndividual().get()).stream().forEach(i -> {
-//							System.out.println("AP "+i);
 							completeAgentMetadata(i, ag, o);
 						});
 					}else{
 						IRI valueURI = a.getValue().asIRI().get();
 						o.getAnnotationAssertionAxioms(valueURI).stream().forEach(i -> {
-//							System.out.println("NAMED " + i);
 							completeAgentMetadata(i, ag, o);
 						});
 						if(ag.getName()==null || ag.getName().equals("")){

src/main/java/widoco/Constants.java

@@ -330,6 +330,8 @@ public class Constants {
                 + "        This flag can only be used with the htaccess option.\n" +
 "    -excludeIntroduction: Skip the introduction section in the documentation. \n" +
 "    -uniteSections: Write all HTML sections into a single HTML document. \n" +
+"    -noPlaceHolderText: Do not add any placeholder text (this will remove intro, abstract (if empty) and " +
+				"description sections)." +
 "    --help: Shows this message and exit.\n";  
 
 	/**

src/main/java/widoco/gui/GuiController.java

@@ -82,7 +82,8 @@ public GuiController(String[] args) {
 		boolean isFromFile = false, oops = false, rewriteAll = false, getOntoMetadata = true, useW3Cstyle = true,
 				includeImportedOntologies = false, htAccess = false, webVowl = false, errors = false, licensius = false,
 				generateOnlyCrossRef = false, includeNamedIndividuals = true, includeAnnotationProperties = false,
-				displaySerializations = true, displayDirectImportsOnly = false, excludeIntroduction = false, uniteSections = false;
+				displaySerializations = true, displayDirectImportsOnly = false, excludeIntroduction = false, uniteSections = false,
+				placeHolderText = true;
 		String confPath = "";
 		String code = null;// for tracking analytics.
 		String[] languages = null;
@@ -166,12 +167,15 @@ public GuiController(String[] args) {
 			case "-excludeIntroduction":
 				excludeIntroduction = true;
 				break;
-                        case "-uniteSections":
+			case "-uniteSections":
 				uniteSections = true;
 				break;
-                        case "--help":
-                            System.out.println(Constants.HELP_TEXT);
-                            return;
+			case "-noPlaceHolderText":
+				placeHolderText = false;
+				break;
+			case "--help":
+				System.out.println(Constants.HELP_TEXT);
+				return;
 			default:
 				System.out.println("Command" + s + " not recognized.");
 				System.out.println(Constants.HELP_TEXT);
@@ -212,10 +216,16 @@ public GuiController(String[] args) {
 		this.config.setIncludeAnnotationProperties(includeAnnotationProperties);
 		this.config.setDisplaySerializations(displaySerializations);
 		this.config.setDisplayDirectImportsOnly(displayDirectImportsOnly);
-                this.config.setIncludeAllSectionsInOneDocument(uniteSections);
+		this.config.setIncludeAllSectionsInOneDocument(uniteSections);
 		if (excludeIntroduction) {
 			this.config.setIncludeIntroduction(false);
 		}
+		if (!placeHolderText){
+			this.config.setIncludeIntroduction(false);
+			this.config.setIncludeDescription(false);
+			this.config.setIncludeReferences(false);
+			this.config.setIncludeAbstract(false);
+		}
 		if (code != null) {
 			this.config.setGoogleAnalyticsCode(code);
 		}
@@ -257,6 +267,10 @@ public GuiController(String[] args) {
 					if (getOntoMetadata) {
 						logger.info("Load properties from the ontology in lang " + l);
 						config.loadPropertiesFromOntology(config.getMainOntology().getOWLAPIModel());
+						if (config.getAbstractSection()!=null && !config.getAbstractSection().equals("") &&
+							placeHolderText == false){
+							config.setIncludeAbstract(true);
+						}
 					}
 					CreateResources.generateDocumentation(outFolder, config, config.getTmpFile());
 					config.vocabularySuccessfullyGenerated();