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examples: tidied up notebooks and examples for paper submission #22

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merged 9 commits into from
Jun 29, 2023
Merged

examples: tidied up notebooks and examples for paper submission #22

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9d6df14
examples: tidied and homogenised notebooks, laid groundwork for regre…
EdCaunt Jun 28, 2023
9317d9b
examples: added a README to the examples folder
EdCaunt Jun 29, 2023
8d37a47
examples: minor tidy up in examples scripts
EdCaunt Jun 29, 2023
cfb2db9
examples: added asserts to 1st-order acoustic convergence test
EdCaunt Jun 29, 2023
da92512
examples: merged in the updated geometry handling for staggered grids
EdCaunt Jun 29, 2023
0452278
examples: added asserts to 1st-order acoustic convergence test
EdCaunt Jun 29, 2023
19c885b
example: added norm check to 3D acoustic notebook
EdCaunt Jun 29, 2023
0635e0a
geometry: added floating point tolerance back into interior sectioning
EdCaunt Jun 29, 2023
48180eb
geometry: fixed the staggered interior-sectioning test
EdCaunt Jun 29, 2023
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geometry: added floating point tolerance back into interior sectioning
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@EdCaunt
EdCaunt committed Jun 29, 2023
commit 0635e0ac802491574b7001c4fe5347a166ab886b
4 changes: 3 additions & 1 deletion schism/geometry/geometry.py
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Expand Up @@ -236,8 +236,10 @@ def _get_interior_mask(self):
_, i = kdtree.query(query, workers=-1)

# Check nearest boundary point not in box
# Errs on the side of caution (cutoff slightly larger
# according to floating point precision)
interior = np.any(np.abs(query - bp[i])
> cutoff*np.array(spacing)[np.newaxis, :],
> (cutoff+_feps)*np.array(spacing)[np.newaxis, :],
axis=1)

# Fill interior mask away from boundary
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