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MERMAKE Public
Backend code for the MERFISH+ line of spatial transcriptomic microscopes
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genbank Public
Python code to work with Genbank files
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genotate Public
Prokaryotic and phage genome annotation tool
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prfect Public
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes
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sdeconv Public
Forked from sylvainprigent/sdeconv2D and 3D image deconvolution with python
Python Other UpdatedFeb 12, 2025 -
PHANOTATE Public
PHANOTATE: a gene caller for phages.
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fastpath Public
A program to find the path through a network of nodes.
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HotKnots Public
Fast, and best, DNA/RNA folding algorithm
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kmeans Public
A python implementation of the kmeans algorithm that functions as a drop in for sklearn
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PHACTS Public
A simple program to classify the lifestyle of phages.
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LinearFold Public
Forked from LinearFold/LinearFoldThe new source code of the LinearFold, linear-time prediction for RNA secondary structures
C++ Other UpdatedMar 16, 2023 -
CodingFrame Public
A tool to identify which of the six frames of a DNA backbone is the protein coding frame
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circualign Public
A tool to align circular genomes on a common feature
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ggVennDiagram Public
Forked from gaospecial/ggVennDiagramA 'ggplot2' implement of Venn Diagram.
R GNU General Public License v3.0 UpdatedSep 8, 2022 -
genbank_template Public
A boilerplate template that uses the genbank pypi package to work with genbank files
Python GNU General Public License v3.0 UpdatedJul 15, 2022 -
gloome_tools Public
Script to mess with gloome output
Python GNU General Public License v3.0 UpdatedApr 28, 2022 -
protdist Public
A python script to run protdist easily
C GNU General Public License v3.0 UpdatedApr 7, 2022 -
RepeatFinder Public
A python package to quickly find repeats in a DNA sequence
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seq-align Public
Forked from noporpoise/seq-alignFast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
C UpdatedNov 25, 2021 -
seqdbmaker Public
Scripts to create a sequence database
Python GNU General Public License v3.0 UpdatedSep 3, 2021 -
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dedupe Public
Forked from dedupeio/dedupe🆔 A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.
Python MIT License UpdatedMar 24, 2021 -