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  • Memorial Sloan Kettering Cancer Center
  • New York, NY

Achievements

Achievement: YOLOAchievement: Pull Sharkx2

Achievements

Achievement: YOLOAchievement: Pull Sharkx2

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  1. papaemmelab/toil_container papaemmelab/toil_container Public

    🐳 Toil + Docker and Singularity.

    Python 9 6

  2. PCAP-core PCAP-core Public

    Forked from cancerit/PCAP-core

    NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

    Perl

  3. papaemmelab/split_bed_by_reads papaemmelab/split_bed_by_reads Public

    Split bed intervals by maximum read counts

    Nim 9

  4. papaemmelab/cookiecutter-toil papaemmelab/cookiecutter-toil Public

    🍪 Cookiecutter template for Class Based Toil pipelines.

    Python 4 1

  5. papaemmelab/Shukla_Levine_Gundem papaemmelab/Shukla_Levine_Gundem Public

    Data for Shukla, Levine, Gundem et al.

    Jupyter Notebook 5 1

  6. papaemmelab/Domenico_Asimomitis_ICML_2023 papaemmelab/Domenico_Asimomitis_ICML_2023 Public

    Code accompanying "High-Resolution Interpretable Classification of Artifacts versus Real Variants in Whole Genome Sequencing Data from Archived Tissue" by Domenico & Asimomitis et al. https://icml-…

    Jupyter Notebook 1 1