SAPPORO Test Workflow

Workflows written in common workflow language (CWL) for testing SAPPORO

Run a workflow

(Plesae see how to install cwltool: https://github.com/common-workflow-language/cwltool)

To run a workflow named trimming_and_qc.cwl, type as follows:

cwltool --outdir output ./workflow/trimming_and_qc.cwl ./job/trimming_and_qc.cwl

Visualize trimming_and_qc.cwl

(Visualize at 2019-1-20 using CWL Viewer https://view.commonwl.org)