SAPPORO Test Workflow

Workflows written in common workflow language (CWL) for testing SAPPORO

Run a workflow

(Plesae see how to install cwltool: https://github.com/common-workflow-language/cwltool)

To run a workflow named workflow/trimming_and_qc/trimming_and_qc, type as follows:

$ cwltool --outdir output ./workflow/trimming_and_qc/trimming_and_qc_no_upload/trimming_and_qc_no_upload.cwl ./test/workflow/job/trimming_and_qc_no_upload.yml

Visualize trimming_and_qc_no_upload.cwl

(Visualize at 2019-1-20 using CWL Viewer https://view.commonwl.org)