Update test for 379e1b6

test/check.chk

@@ -26,10 +26,16 @@ SN	0	number of indels:	9
 SN	0	number of others:	2
 SN	0	number of multiallelic sites:	6
 SN	0	number of multiallelic SNP sites:	1
-# TSTV, transitions/transversions:
+# TSTV, transitions/transversions
+#   - transitions, see https://en.wikipedia.org/wiki/Transition_(genetics)
+#   - transversions, see https://en.wikipedia.org/wiki/Transversion
 # TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
 TSTV	0	3	2	1.50	3	1	3.00
 # SiS, Singleton stats:
+#   - allele count, i.e. the number of singleton genotypes (AC=1)
+#   - number of transitions, see above
+#   - number of transversions, see above
+#   - repeat-consistent, inconsistent and n/a: experimental and useless stats [DEPRECATED]
 # SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
 SiS	0	1	3	1	2	0	0	0	0
 # AF, Stats by non-reference allele frequency:
@@ -75,6 +81,13 @@ ST	0	G>T	1
 ST	0	T>A	0
 ST	0	T>C	0
 ST	0	T>G	0
+# DP, depth:
+#   - set id, see above
+#   - the depth bin, corresponds to the depth (unless --depth was given)
+#   - number of genotypes with this depth (zero unless -s/-S was given)
+#   - fraction of genotypes with this depth (zero unless -s/-S was given)
+#   - number of sites with this depth
+#   - fraction of sites with this depth
 # DP, Depth distribution
 # DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)
 DP	0	10	2	5.555556	0	0.000000