ML-based Anomaly Detection for data content #990
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,209 @@ | ||
| name: anomaly | ||
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| on: | ||
| pull_request: | ||
| types: [ opened, synchronize, ready_for_review ] | ||
| merge_group: | ||
| types: [ checks_requested ] | ||
| push: | ||
| branches: | ||
| - main | ||
|
|
||
| permissions: | ||
| id-token: write | ||
| contents: read | ||
| pull-requests: write | ||
|
|
||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: false # don't cancel ongoing runs to ensure fixtures are completed and resources terminated | ||
|
|
||
| jobs: | ||
| anomaly-tests: | ||
| if: github.event_name == 'pull_request' && !github.event.pull_request.draft && !github.event.pull_request.head.repo.fork | ||
| environment: tool | ||
| runs-on: larger | ||
| steps: | ||
| - name: Checkout Code | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Install Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| cache: 'pip' | ||
| cache-dependency-path: '**/pyproject.toml' | ||
| python-version: '3.12' | ||
|
|
||
| - name: Install hatch | ||
| run: pip install hatch==1.15.0 | ||
|
|
||
| # Anomaly tests are run from within tests/integration_anomaly folder. | ||
| # Create .coveragerc with correct relative path to source code. | ||
| - name: Prepare code coverage configuration for anomaly tests | ||
| run: | | ||
| cat > tests/integration_anomaly/.coveragerc << EOF | ||
| [run] | ||
| source = ../../../src | ||
| parallel = true | ||
| relative_files = true | ||
| EOF | ||
|
|
||
| - name: Azure login (OIDC) | ||
| uses: azure/login@v2 | ||
| with: | ||
| client-id: ${{ secrets.ARM_CLIENT_ID }} | ||
| tenant-id: ${{ secrets.ARM_TENANT_ID }} | ||
| allow-no-subscriptions: true | ||
|
|
||
| - name: Set env vars for Azure CLI auth + MLflow | ||
| shell: bash | ||
| run: | | ||
| val=$(az keyvault secret show --id "${{ secrets.VAULT_URI }}/secrets/DATABRICKS-HOST" --query value -o tsv) | ||
| # Ensure host has https:// prefix (SDK and MLflow expect full URL) | ||
| if [[ ! "$val" =~ ^https?:// ]]; then | ||
| val="https://$val" | ||
| fi | ||
| # Workaround for MLflow OIDC auth: MLflow requires a profile to exist even when it uses SDK auth. | ||
| dummy_profile="${RUNNER_TEMP}/databricks_profile" | ||
| cat > "$dummy_profile" << EOF | ||
| [DEFAULT] | ||
| host = $val | ||
| token = dummy | ||
| EOF | ||
| echo "DATABRICKS_HOST=$val" >> $GITHUB_ENV | ||
| # Set cluster ID without printing to logs | ||
| echo "DATABRICKS_CLUSTER_ID=$(az keyvault secret show --id "${{ secrets.VAULT_URI }}/secrets/DATABRICKS-CLUSTER-ID" --query value -o tsv)" >> $GITHUB_ENV | ||
| # Set warehouse ID without printing to logs | ||
| echo "DATABRICKS_WAREHOUSE_ID=$(az keyvault secret show --id "${{ secrets.VAULT_URI }}/secrets/DATABRICKS-WAREHOUSE-ID" --query value -o tsv)" >> $GITHUB_ENV | ||
| echo "DATABRICKS_AUTH_TYPE=azure-cli" >> $GITHUB_ENV | ||
| echo "DATABRICKS_CONFIG_FILE=$dummy_profile" >> $GITHUB_ENV | ||
|
|
||
| # MLflow: Use databricks scheme so MLflow uses SDK auth (with dummy profile present). | ||
| echo "MLFLOW_ENABLE_DB_SDK=true" >> $GITHUB_ENV | ||
| echo "MLFLOW_TRACKING_URI=databricks" >> $GITHUB_ENV | ||
| echo "MLFLOW_REGISTRY_URI=databricks-uc" >> $GITHUB_ENV | ||
|
|
||
| - name: Run anomaly integration tests and generate test coverage report | ||
| timeout-minutes: 120 | ||
| env: | ||
| COVERAGE_FILE: ${{ github.workspace }}/.coverage | ||
| DATABRICKS_HOST: ${{ env.DATABRICKS_HOST }} | ||
| DATABRICKS_CLUSTER_ID: ${{ env.DATABRICKS_CLUSTER_ID }} | ||
| DATABRICKS_WAREHOUSE_ID: ${{ env.DATABRICKS_WAREHOUSE_ID }} | ||
| DATABRICKS_AUTH_TYPE: ${{ env.DATABRICKS_AUTH_TYPE }} | ||
| DATABRICKS_CONFIG_FILE: ${{ env.DATABRICKS_CONFIG_FILE }} | ||
| MLFLOW_ENABLE_DB_SDK: "true" | ||
| MLFLOW_TRACKING_URI: ${{ env.MLFLOW_TRACKING_URI }} | ||
| MLFLOW_REGISTRY_URI: "databricks-uc" | ||
| MLFLOW_HTTP_REQUEST_TIMEOUT: "600" | ||
| MLFLOW_HTTP_REQUEST_MAX_RETRIES: "10" | ||
| run: | | ||
| hatch run pytest tests/integration_anomaly/ -v -rs -n 10 --cov --cov-report=xml --timeout=1200 --reruns 2 --reruns-delay 5 | ||
|
|
||
| - name: Merge coverage reports and convert them to XML | ||
| if: ${{ false }} # disabled temporarily | ||
| run: | | ||
| hatch run combine_coverage | ||
|
|
||
| # Recursively search the entire workspace directory for all coverage reports. | ||
| # All uploaded test coverage reports will be used even if publish is done multiple time. | ||
| - name: Publish test coverage | ||
| if: ${{ false }} # disabled temporarily | ||
| uses: codecov/codecov-action@v5 | ||
| with: | ||
| use_oidc: true | ||
|
|
||
| anomaly-tests-serverless: | ||
| if: github.event_name == 'pull_request' && !github.event.pull_request.draft && !github.event.pull_request.head.repo.fork | ||
| environment: tool | ||
| runs-on: larger | ||
| steps: | ||
| - name: Checkout Code | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Install Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| cache: 'pip' | ||
| cache-dependency-path: '**/pyproject.toml' | ||
| python-version: '3.12' | ||
|
|
||
| - name: Install hatch | ||
| run: pip install hatch==1.15.0 | ||
|
|
||
| # Anomaly tests are run from within tests/integration_anomaly folder. | ||
| # Create .coveragerc with correct relative path to source code. | ||
| - name: Prepare code coverage configuration for anomaly tests | ||
| run: | | ||
| cat > tests/integration_anomaly/.coveragerc << EOF | ||
| [run] | ||
| source = ../../../src | ||
| parallel = true | ||
| relative_files = true | ||
| EOF | ||
|
|
||
| - name: Azure login (OIDC) | ||
| uses: azure/login@v2 | ||
| with: | ||
| client-id: ${{ secrets.ARM_CLIENT_ID }} | ||
| tenant-id: ${{ secrets.ARM_TENANT_ID }} | ||
| allow-no-subscriptions: true | ||
|
|
||
| - name: Set env vars for Azure CLI auth + MLflow | ||
| shell: bash | ||
| run: | | ||
| val=$(az keyvault secret show --id "${{ secrets.VAULT_URI }}/secrets/DATABRICKS-HOST" --query value -o tsv) | ||
| # Ensure host has https:// prefix (SDK and MLflow expect full URL) | ||
| if [[ ! "$val" =~ ^https?:// ]]; then | ||
| val="https://$val" | ||
| fi | ||
| # Workaround for MLflow OIDC auth: MLflow requires a profile to exist even when it uses SDK auth. | ||
| dummy_profile="${RUNNER_TEMP}/databricks_profile" | ||
| cat > "$dummy_profile" << EOF | ||
| [DEFAULT] | ||
| host = $val | ||
| token = dummy | ||
| EOF | ||
| echo "DATABRICKS_HOST=$val" >> $GITHUB_ENV | ||
| echo "DATABRICKS_AUTH_TYPE=azure-cli" >> $GITHUB_ENV | ||
| echo "DATABRICKS_CONFIG_FILE=$dummy_profile" >> $GITHUB_ENV | ||
| # Set warehouse ID without printing to logs | ||
| echo "DATABRICKS_WAREHOUSE_ID=$(az keyvault secret show --id "${{ secrets.VAULT_URI }}/secrets/DATABRICKS-WAREHOUSE-ID" --query value -o tsv)" >> $GITHUB_ENV | ||
|
|
||
| # MLflow: Use databricks scheme so MLflow uses SDK auth (with dummy profile present). | ||
| echo "MLFLOW_ENABLE_DB_SDK=true" >> $GITHUB_ENV | ||
| echo "MLFLOW_TRACKING_URI=databricks" >> $GITHUB_ENV | ||
| echo "MLFLOW_REGISTRY_URI=databricks-uc" >> $GITHUB_ENV | ||
|
|
||
| - name: Run anomaly integration tests on serverless cluster | ||
| timeout-minutes: 120 | ||
| env: | ||
| COVERAGE_FILE: ${{ github.workspace }}/.coverage | ||
| DATABRICKS_SERVERLESS_COMPUTE_ID: auto | ||
| DATABRICKS_HOST: ${{ env.DATABRICKS_HOST }} | ||
| DATABRICKS_WAREHOUSE_ID: ${{ env.DATABRICKS_WAREHOUSE_ID }} | ||
| DATABRICKS_AUTH_TYPE: ${{ env.DATABRICKS_AUTH_TYPE }} | ||
| DATABRICKS_CONFIG_FILE: ${{ env.DATABRICKS_CONFIG_FILE }} | ||
| MLFLOW_ENABLE_DB_SDK: "true" | ||
| MLFLOW_TRACKING_URI: ${{ env.MLFLOW_TRACKING_URI }} | ||
| MLFLOW_REGISTRY_URI: "databricks-uc" | ||
| MLFLOW_HTTP_REQUEST_TIMEOUT: "600" | ||
| MLFLOW_HTTP_REQUEST_MAX_RETRIES: "10" | ||
| run: | | ||
| hatch run pytest tests/integration_anomaly/ -v -rs -n 10 --cov --cov-report=xml --timeout=1200 --reruns 2 --reruns-delay 5 | ||
|
|
||
| - name: Merge coverage reports and convert them to XML | ||
| if: ${{ false }} # disabled temporarily | ||
| run: | | ||
| hatch run combine_coverage | ||
|
|
||
| # collects all coverage reports | ||
| - name: Publish test coverage | ||
| if: ${{ false }} # disabled temporarily | ||
| uses: codecov/codecov-action@v5 | ||
| with: | ||
| use_oidc: true |
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why do we need this change?