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Update and improve test environments #432

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50d662b
Make dask[dataframe] and pandas optional, only required for find_obje…
astrofrog Apr 24, 2026
d1e295f
Add minimal-install CI job and opt existing jobs into [dataframe] ext…
astrofrog Apr 24, 2026
67e74e7
Fix scipy 1.14+ generic_filter compat and exclude _version.py from fl…
astrofrog Apr 24, 2026
ee2aa0c
Add conda environment configuration for Python 3.13
m-albert Apr 27, 2026
0d8fea6
Update Python requirement to 3.10 and remove 3.9 classifier from pypr…
m-albert Apr 27, 2026
d3f8d7e
Update Python versions in CI workflow and add environment configurati…
m-albert Apr 27, 2026
e376f7f
Add test job for dask-image with all extras on latest dependencies
m-albert Apr 27, 2026
83a45b9
Run test-minimal on all platforms
m-albert Apr 27, 2026
7f4b2f2
Add Python 3.13 and 3.14 classifiers to pyproject.toml
m-albert Apr 27, 2026
becec91
Update pip version to 24.3.1 in environment-3.13.yml
m-albert Apr 27, 2026
a41707a
Update pip version to 25.0.1 in environment-3.14.yml
m-albert Apr 27, 2026
57e117d
Remove Python 3.14 from test matrix and classifiers in workflow and p…
m-albert Apr 27, 2026
7f22f91
Remove Python 3.14 test environment configuration
m-albert Apr 27, 2026
2d49119
Update pims version to 0.7 in environment-3.13.yml
m-albert Apr 27, 2026
3ecc2fd
Update Python version to 3.10 in environment-doc.yml
m-albert Apr 27, 2026
ff0b032
Merge branch 'main' into update-test-environments
GenevieveBuckley May 18, 2026
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33 changes: 31 additions & 2 deletions .github/workflows/test_and_deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ jobs:
fail-fast: true
matrix:
os: ["windows-latest", "ubuntu-latest", "macos-latest"]
python-version: ["3.9", "3.10", "3.11", "3.12"]
python-version: ["3.10", "3.11", "3.12", "3.13"]

steps:
- name: Checkout source
Expand Down Expand Up @@ -52,7 +52,11 @@ jobs:
test-minimal:
# Verify dask-image works without the optional `dataframe` extras
# (i.e. without pandas and dask[dataframe]).
runs-on: ubuntu-latest
runs-on: ${{ matrix.os }}
strategy:
Comment on lines +52 to +56

Copilot AI Apr 27, 2026

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deploy (and potentially coveralls) still only depends on test. With the new test-minimal and test-latest-all-extras jobs, a tagged release could publish even if those new test jobs fail, since they are not included in deploy.needs. Update the workflow so deploy.needs (and any other gating jobs) includes the new test jobs.

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fail-fast: true
matrix:
os: ["windows-latest", "ubuntu-latest", "macos-latest"]
steps:
- name: Checkout source
uses: actions/checkout@v6
Expand All @@ -70,6 +74,31 @@ jobs:
- name: Run tests (find_objects tests are skipped automatically)
run: pytest -v

test-latest-all-extras:
# Verify dask-image works with the latest unfixed dependencies, including
# optional `dataframe` extras so find_objects is also tested.
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: ["windows-latest", "ubuntu-latest", "macos-latest"]
steps:
- name: Checkout source
uses: actions/checkout@v5

- name: Set up Python
uses: actions/setup-python@v6
with:
python-version: "3.13"

- name: Install dask-image with all extras
run: |
python -m pip install --upgrade pip
python -m pip install -e .[dataframe,test]

- name: Run tests
run: pytest -v

coveralls:
needs: test
runs-on: ubuntu-latest
Expand Down
24 changes: 24 additions & 0 deletions continuous_integration/environment-3.13.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
name: dask-image-testenv

channels:
- conda-forge

dependencies:
- python=3.13.*
- pip==24.3.1
- coverage==7.6.1
- flake8==7.1.1
- pytest==8.3.4
- pytest-cov==6.0.0
- pytest-flake8==1.3.0
- pytest-timeout >=2.3.1
- dask==2025.1.0
- numpy==2.2.0
- scipy==1.15.0
- scikit-image==0.25.0
- pims==0.7
- slicerator==1.1.0
- pandas==2.2.3
- twine==6.0.1
- pip:
- build==1.2.2
24 changes: 0 additions & 24 deletions continuous_integration/environment-3.9.yml
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2 changes: 1 addition & 1 deletion continuous_integration/environment-doc.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ channels:
- conda-forge

dependencies:
- python=3.9.*
- python=3.10.*
- pip==22.3
- jinja2<3.1
- dask==2024.4.1
Expand Down
4 changes: 2 additions & 2 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,18 +10,18 @@ keywords = ["dask-image", "dask", "image"]
readme = "README.rst"
license = { text = "BSD-3-Clause" }
dynamic = ["version"]
requires-python = ">=3.9"
requires-python = ">=3.10"
classifiers = [
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"Development Status :: 2 - Pre-Alpha",
"Intended Audience :: Developers",
"License :: OSI Approved :: BSD License",
"Natural Language :: English",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
]
dependencies = [
"dask[array] >=2024.4.1",
Expand Down
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