Create initial content (#1)

* Generate with dask-image/dask-image-cookiecutter

Use a cookiecutter template to generate all of the contents for
dask-image to start with. Will need some tweaking afterwards, but this
at least provides a good starting point.

* Wrap license text, add years, note authors

Still a BSD 3-Clause license. No actually license content changed. Did
wrap the text though as GitHub doesn't do that for us with text files.
Also updated the years and noted the copyright belongs to dask-image
developers.

* Update license metadata to include clauses

* Fix URLs to point to Dask org

The cookiecutter template was designed to template these with the
relevant GitHub username. Hence this ends up being incorrect and needed
to be fixed.

* Clean up conda environment name

* Move PR guidelines into PR template

* Strip some extra whitespace in Travis CI config

.coveragerc

@@ -0,0 +1,28 @@
+[run]
+branch = True
+source = dask_image
+[report]
+exclude_lines =
+    # Include the no cover pragma as it needs to be listed explicitly when
+    # using exclude_lines.
+    # ( http://coverage.readthedocs.io/en/coverage-4.1/excluding.html#advanced-exclusion )
+    pragma: no cover
+
+    # Ignore coverage of code that requires the module to be executed.
+    if __name__ == .__main__.:
+
+    # Ignore continue statement in code as it can't be detected as covered
+    # due to an optimization by the Python interpreter. See coverage issue
+    # ( https://bitbucket.org/ned/coveragepy/issue/198/continue-marked-as-not-covered )
+    # and Python issue ( http://bugs.python.org/issue2506 ).
+    continue
+omit =
+    */python?.?/*
+    */site-packages/*
+    */eggs/*
+    */.eggs/*
+    *tests/*
+    */travis_pypi_setup.py
+    */versioneer.py
+    */_version.py
+    */_vendor/*

.editorconfig

@@ -0,0 +1,21 @@
+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab

.gitattributes

@@ -0,0 +1 @@
+dask_image/_version.py export-subst

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,15 @@
+* dask-image version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,9 @@
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring, and add the
+   feature to the list in README.rst.
+3. The pull request should work for Python 2.7, 3.4, 3.5, and 3.6. Check
+   https://travis-ci.org/dask/dask-image/pull_requests
+   and make sure that the tests pass for all supported Python versions.

.gitignore

@@ -0,0 +1,63 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+docs/_build/
+docs/dask_image*.rst
+
+# PyBuilder
+target/
+
+# pyenv python configuration file
+.python-version

.travis.yml

@@ -0,0 +1,54 @@
+# Config file for automatic testing at travis-ci.org
+# This file will be regenerated if you run travis_pypi_setup.py
+
+sudo: false
+
+language: generic
+
+env:
+  - PYVER="3.6"
+  - PYVER="3.5"
+  - PYVER="3.4"
+  - PYVER="2.7"
+
+install:
+  # Install Miniconda.
+  - curl -L https://repo.continuum.io/miniconda/Miniconda3-4.1.11-Linux-x86_64.sh > miniconda.sh
+  - openssl md5 miniconda.sh | grep 874dbb0d3c7ec665adf7231bbb575ab2
+  - bash miniconda.sh -b -p ~/miniconda
+  - rm miniconda.sh
+  - source ~/miniconda/bin/activate root
+  - conda config --set show_channel_urls true
+  - conda update -y -n root --all
+  - conda install -y -n root conda-build
+  - conda clean -tipsy
+
+  # Create the test environment.
+  - conda create -y -n testenv python="${PYVER}"
+  - conda remove -y --force -n testenv openssl
+  - conda env update -n testenv --file environment_ci.yml
+  - conda list --full-name -n testenv openssl || conda install -y -n testenv openssl
+  - source activate testenv
+
+  # Install the package and dependencies.
+  - pip install -e .
+
+# command to run tests, e.g. python setup.py test
+script:
+  - coverage erase
+  - coverage run --source . setup.py test
+  - coverage report -m
+
+# Report coverage
+after_success:
+  - source activate root
+  - conda create -y -n dplenv python="3.5";
+  - conda remove -y --force -n dplenv openssl
+  - conda env update -n dplenv --file environment_dpl.yml
+  - conda list --full-name -n dplenv openssl || conda install -y -n dplenv openssl
+  - source activate dplenv
+  - coveralls
+
+# Disable email notifications.
+notifications:
+  email: false

AUTHORS.rst

@@ -0,0 +1,13 @@
+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* John Kirkham <kirkhamj@janelia.hhmi.org>
+
+Contributors
+------------
+
+None yet. Why not be the first?

CONTRIBUTING.rst

@@ -0,0 +1,99 @@
+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every
+little bit helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://github.com/dask/dask-image/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug"
+and "help wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+dask-image could always use more documentation, whether as part of the
+official dask-image docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://github.com/dask/dask-image/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+  are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `dask-image` for local development.
+
+1. Fork the `dask-image` repo on GitHub.
+2. Clone your fork locally::
+
+    $ git clone git@github.com:your_name_here/dask-image.git
+
+3. Install your local copy into an environment. Assuming you have conda installed, this is how you set up your fork for local development (on Windows drop `source`). Replace `"<some version>"` with the Python version used for testing.::
+
+    $ conda create -n dask-image-env python="<some version>"
+    $ source activate dask-image-env
+    $ python setup.py develop
+
+4. Create a branch for local development::
+
+    $ git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass flake8 and the tests, including testing other Python versions::
+
+    $ flake8 dask_image tests
+    $ python setup.py test or py.test
+
+   To get flake8, just conda install it into your environment.
+
+6. Commit your changes and push your branch to GitHub::
+
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a pull request through the GitHub website.
+
+Tips
+----
+
+To run a subset of tests::
+
+    $ py.test tests/test_dask_image.py

HISTORY.rst

@@ -0,0 +1,8 @@
+=======
+History
+=======
+
+0.1.0 (2018-03-02)
+------------------
+
+* First release on PyPI.

LICENSE.txt

@@ -0,0 +1,27 @@
+Copyright (c) 2017-2018, dask-image Developers (see AUTHORS.rst for details)
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation
+and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

MANIFEST.in

@@ -0,0 +1,14 @@
+include AUTHORS.rst
+include CONTRIBUTING.rst
+include HISTORY.rst
+include LICENSE.txt
+include README.rst
+
+recursive-include tests *
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+
+recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
+
+include versioneer.py
+include dask_image/_version.py