feat: [scan] config, writing-skill floors, reference docs overhaul - #209
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.signalsignore moves into [scan] in .claude/atomic.toml (ignore and generated lists; a migration converts and removes the legacy file, and unconverted repos keep working). The reference docs pass draws every stateful shape — lifecycles, pipelines, dispatch topology, the implement-review loop as an orchestrator-centered sequence with scratchpad write ownership and the final audit — and moves edge cases out of happy-path prose into tables; the signals/wiki reference pages become repo-wiki and realm-wiki. The pass's findings are encoded into atomic-writing as enforceable floors (diagram triggers, opening contract, caveat quarantine) with shipped exemplar pages, and the documentation surfaces table gains ownership routing so sibling pages point instead of copying.
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A hand pass over the reference docs, with what it found encoded back into the system so agent-written pages converge on the same shape.
Every stateful page now draws its shape: repl lifecycle, bus exchange, wiki pipelines, agent dispatch topology, and the implement-review loop as an orchestrator-centered sequence showing scratchpad write ownership and the final audit. Edge cases move out of happy-path prose into tables, and the signals/wiki reference pages become Repo wiki and Realm wiki, finishing the naming unification.
What the diff can't show: the pass's findings became enforceable rules in
atomic-writing— mandatory diagram floors, an opening contract, caveat quarantine — with shipped exemplar pages underreferences/..signalsignoremoves into[scan]in.claude/atomic.tomlwith a migration; unconverted repos keep working.The serve mermaid fix found during this work lands via #207.