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almanac Public
Forked from software-gardening/almanackAn open-source handbook of applied guidance and tools for sustainable software development and maintenance.
BSD 3-Clause "New" or "Revised" License UpdatedDec 24, 2024 -
pycytominer Public
Forked from cytomining/pycytominerPython package for processing image-based profiling data
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 24, 2024 -
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CytoDataFrame Public
Forked from WayScience/CytoDataFrameAn in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
BSD 3-Clause "New" or "Revised" License UpdatedDec 16, 2024 -
coSMicQC Public
Forked from WayScience/coSMicQCcoSMicQC is a software tool for single-cell quality control of morphology datasets.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 15, 2024 -
CytoTable Public
Forked from cytomining/CytoTableTransform data for processing image-based profiling readouts with Pycytominer.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 12, 2024 -
CU-DBMI.github Public
Forked from CU-DBMI/.githubA special GitHub repository for setting the organization profile and default community health files.
BSD 3-Clause "New" or "Revised" License UpdatedDec 10, 2024 -
hetionet-analysis Public
Forked from CU-DBMI/hetionet-analysisVarious data analysis performed using Hetionet, a hetnet of biomedical knowledge.
BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2024 -
CPBS7601 Public
Forked from WayScience/CPBS7601Course on computing skills in biomedical informatics
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 18, 2024 -
pre-commit-sbom-check Public
Pre-commit hook for generating and checking a software bill of materials (SBOM) within a repository.
Shell BSD 3-Clause "New" or "Revised" License UpdatedNov 13, 2024 -
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set-presentations Public
Forked from CU-DBMI/set-presentationsA repository for presentations from the DBMI Software Engineering Team (SET)
BSD 3-Clause "New" or "Revised" License UpdatedNov 1, 2024 -
JUMP-single-cell Public
Forked from WayScience/JUMP-single-cellSingle cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 31, 2024 -
pandas Public
Forked from pandas-dev/pandasFlexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 29, 2024 -
demo-uv-dynamic-versioning Public
Demonstrating Pythonic uv usage with dynamic versioning from setuptools-scm.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2024 -
demo-cellprofiler Public
Forked from WayScience/demo-cellprofilerDemonstrating various CellProfiler development or implementations.
Shell BSD 3-Clause "New" or "Revised" License UpdatedOct 23, 2024 -
pycytominer-feedstock Public
Forked from conda-forge/pycytominer-feedstockA conda-smithy repository for pycytominer.
BSD 3-Clause "New" or "Revised" License UpdatedOct 11, 2024 -
cytominer-database Public
Forked from cytomining/cytominer-database[DEPRECATED] A package for storing morphological profiling data.
Python Other UpdatedOct 10, 2024 -
cytominer_database-feedstock Public
Forked from conda-forge/cytominer_database-feedstockA conda-smithy repository for cytominer_database.
BSD 3-Clause "New" or "Revised" License UpdatedOct 9, 2024 -
set-website Public
Forked from CU-DBMI/set-websiteWebsite for the software engineering team (SET)
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Demonstrating how content origin works with GitHub Pages
BSD 3-Clause "New" or "Revised" License UpdatedOct 2, 2024 -
demo-gh-actions-env-vars Public
Demonstrating how GitHub Actions environment variables operate in various contexts.
BSD 3-Clause "New" or "Revised" License UpdatedSep 26, 2024 -
CellProfiler Public
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
Python Other UpdatedSep 25, 2024 -
mitocheck_data Public
Forked from WayScience/mitocheck_dataAll information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedSep 16, 2024 -
playbooks Public
Forked from WayScience/playbooksPlaybooks relevant to the operations of the Way Lab and similar labs.
Creative Commons Zero v1.0 Universal UpdatedSep 16, 2024 -
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 12, 2024 -
software-gardening.github Public
Forked from software-gardening/.githubA .github repo for the Software Gardening organization to help manage default community health files, GH actions, and the org profile.
BSD 3-Clause "New" or "Revised" License UpdatedAug 22, 2024 -
Demonstrating the ability to use sphinx-multiversion with poetry dynamic versioning through github pages.
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 22, 2024