Add is_valid flag to output file.

[aleberti]

No description provided.

[YoshikiOhtani]

Thanks @aleberti, I will merge this pull request now.

[jsitarek]

Hi @aleberti
with this added is_valid field the script does not save the output anymore for me:
File "lst1_magic_stereo_reco.py", line 323, in
main()
File "lst1_magic_stereo_reco.py", line 314, in main
stereo_reconstruction(args.input_file, args.output_dir, config)
File "lst1_magic_stereo_reco.py", line 275, in stereo_reconstruction
save_pandas_to_table(event_data, output_file, group_name='/events', table_name='parameters', mode='w')
File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/magicctapipe/utils/functions.py", line 307, in save_pandas_to_table
f_out.create_table(group_name, table_name, createparents=True, obj=event_table)
File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/tables/file.py", line 1040, in create_table
descr, _ = descr_from_dtype(obj.dtype, ptparams=self.params)
File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/tables/description.py", line 865, in descr_from_dtype
"are not supported yet, sorry" % dtype)
NotImplementedError: structured arrays with columns with type description object are not supported yet, sorry

[aleberti]

Hi @aleberti with this added is_valid field the script does not save the output anymore for me: File "lst1_magic_stereo_reco.py", line 323, in main() File "lst1_magic_stereo_reco.py", line 314, in main stereo_reconstruction(args.input_file, args.output_dir, config) File "lst1_magic_stereo_reco.py", line 275, in stereo_reconstruction save_pandas_to_table(event_data, output_file, group_name='/events', table_name='parameters', mode='w') File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/magicctapipe/utils/functions.py", line 307, in save_pandas_to_table f_out.create_table(group_name, table_name, createparents=True, obj=event_table) File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/tables/file.py", line 1040, in create_table descr, _ = descr_from_dtype(obj.dtype, ptparams=self.params) File "/home/jsitarek/anaconda3/envs/magic-lst1/lib/python3.7/site-packages/tables/description.py", line 865, in descr_from_dtype "are not supported yet, sorry" % dtype) NotImplementedError: structured arrays with columns with type description object are not supported yet, sorry

I just merged a PR into master that should solve the issue