From Bachelor to future

整理了从本科到研究生（目前）的学习内容，相关资源与研究进展，包括但不仅限于，[BS]物联网工程，[MS]计算机技术，python，mooc资源，机器学习，深度学习，cryo-em[冷冻电子显微镜]，3D reconstruction[三维重建]，Computational Vison。

目录

• 版权问题
• 联系与Feedback
• Contents

版权问题

总体上采用 Creative Commons BY-NC-SA 4.0 International License, 同时遵守具体的某个创作的协议. 如有冲突, 以作品本本身的协议为准.

• 对于贡献者, 请遵守如上约定, 尊重创作者的劳动成果, 有来源的需要注明资源的来源(原创者, 网址等等).
• 对于创作者, 如果我们遗漏了你的授权(有些资源无法找到来源)或者损害了你的权益, 对此感到抱歉, 请联系协商或者删除.

联系与Feedback

• issue
• email

Contents

• MOOC
  • Platform
  • CS-COURSE
  • Additional-Courses
• Python
  • Beijing-Institute-of-Technology
  • University-of-MICHIGAN
• Artificial-Intelligence
  • Hardware-Environment-deploy
  • Machine-learning
  • DeepLearning
  • TensorFlow
• Cryo-em
  • Software
  • Papers-Tutorial
  • Lab
  • Related
• Computer-Vision
  • Courses
  • Lab

MOOC

As a beginner,utilize a high efficient platform for self-study is a key step for further improvement.MOOC(Massive Open Online Courses) is a good choice.

Platform

For University

• edx

• coursera

• xuetangx

• 中国大学mooc

For Career Promotion

-Udacity

-网易云课堂

对于CS专业，强烈推荐以下基础课，并附上MOOC网址(亲测）

CS-COURSE

Courses	University	Duration	Instructor
计算机科学和Python编程导论	Massachusetts Institute of Technology	9 week	Eric Grimson
Python for Everybody	University of Michigan	7 week	Charles Severance
程序设计入门—Java语言	Zhejiang University	6 week	翁凯
Java语言程序设计进阶	Zhejiang University	7 week	翁凯
程序设计入门—C语言	Zhejiang University	7 week	翁凯
C语言程序设计进阶	Zhejiang University	8 week	翁凯
C++面向对象程序设计	Peking University	9 week	郭炜
C++语言程序设计	Tsinghua University	12 week	郑莉
数据结构	Zhejiang University	8 week	陈越，何钦铭
数据结构	Tsinghua University	12 week	邓俊辉
算法基础	Peking University	10 week	郭炜
Algorithms	Princeton University	6 week	Robert Sedgewick
操作系统	Tsinghua University	23 week	向勇
计算机操作系统	Nanjing University	6 week	骆斌
计算机网络概论	國立清華大學	8 week	黄能富

Additional-Courses(补充）

Courses	University	Duration	Instructor
电路原理	Tsinghua University	14 week	于歆杰
数字电子技术	Tsinghua University	12 week	王红
模拟电子技术	Tsinghua University	10 week	华成英

Python

Beijing Institute of Technology

Python数据分析与展示

Python网络爬虫与信息提取

Python云端系统开发入门

Python游戏开发入门

Python机器学习应用

Python科学计算三维可视化

Python语言程序设计

University of MICHIGAN

• Programming for Everybody (Getting Started with Python)
• Python Data Structures
• Using Databases with Python
• Using Python to Access Web Data

Courses

Resource material

University of Michigan that use Python:

• EECS/SI 182 - Building Applications for Information Environments
• SI 502 - Networked Computing: Storage, Communication, and Processing
• SI 539 - Design of Complex Web Sites.

Artificial Intelligence

Hardware Environment-deploy

Recommend Blog ----- A Full Hardware Guide to Deep Learning

Machine Learning

DeepLearning

TensorFlow

Courses	University	Duration	Instructor
人工智能实践：Tensorflow笔记	Peking University	8 week	曹健

Cryo-em

Intro

REVIEW-Single-particle cryo-EM—How did it get here and where will it go -Yifan Cheng

Software

1. Relion

• REgularised LIkelihood OptimisatioN
• Download
• Author-Sjors Scheres
• Lab Visualising molecular machines

2. EMAN2.22

3. CryoSPARC

   • the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data.
   • stochastic gradient descent (SGD)
   • branch-and-bound maximum likelihood optimization algorithms

4. UCSF

   • visualization and analysis of molecular structures

5. THUNDER

• A particle-filter framework for robust cryoEM 3D reconstruction

6. SIMPLE

• Single-particle IMage Processing Linux Engine is a program package for cryo-EM image processing, focusing on ab initio 3D reconstruction of low-symmetry single-particles.

7. PHENIX

• Python-based Hierarchical ENvironment for Integrated Xtallography
• a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.

Papers & Tutorial

1. CVPR 2015 paper "Building Proteins in a Day" Source Code
2. New tools for automated high-resolution cryo-EM structure determination in RELION-3 eLife 7:e42166, bioRxiv 421123
3. "Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2"eLife 5:e18722, bioRxiv 059717
4. "RELION: Implementation of a Bayesian approach to cryo-EM structure determination" J. Struc. Biol. 180, 519-530.
5. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination Nature Methods 14, 290-296 (2017)
6. A particle-filter framework for robust cryo-EM 3D reconstruction,Nature Methods volume 15, pages1083–1089 (2018)

Lab

1. MRC-LMB

• The MRC Laboratory of Molecular Biology (LMB) is a research institute dedicated to the understanding of important biological processes at the levels of atoms, molecules, cells and organisms.

2. STAN(https://cryoem.slac.stanford.edu/)
3. The Intel® Parallel Computing Center for Structural Biology

• Intel® PCCSB is an innovation-oriented research center hosted at Dana-Farber Cancer Institute DFCI and Harvard Medical School HMS. Laboratory for Cryo-Electron Microscopy

4. Cambridge Institute for Medical Research
5. Paul D. Adams
6. (http://kinemage.biochem.duke.edu/)
7. Thomas C. Terwilliger

• Laboratory Fellow, Los Alamos National Laboratory

8. Structural Medicine

• part of the Department of Haematology in the University of Cambridge and the Cambridge Institute for Medical Research (CIMR)

Related

1. EM-course
2. vedio

• relion workshop

3. AlphaFold: Using AI for scientific discovery

• apply cutting-edge techniques to predict the 3D structure of a protein based solely on its genetic sequence.

4. MODEL-Scientific data visualization

Computer-Vision

Courses

Courses	university	Duration	Effort	Frequency	Prerequisites
CS231n: Convolutional Neural Networks for Visual Recognition	Stanford	12 week	5 hours/week	self-paced	none

https://web.stanford.edu/class/cs231a/

Lab

1. Stanford CVGL
2. Stanford Vision Lab
3. Caltech Computational Vision

Outlook

Due to the future plan,i decide not to keep this track for phd.