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Commits

History for

Commits on Dec 15, 2013

Add content for README.md and add LICENSES
cschin
committed

Commits on Dec 14, 2013

reorganization to make the whole installable as a python package
Jason Chin
committed
falcon_asm.py: add simle mechninary to control debug related output,
Jason Chin
committed
chnage names
Jason Chin
committed
renamed from p_overlapper2.py
Jason Chin
committed
an updated version that fix a bug where the contigs genenration may
Jason Chin
committed
commit the latest change before removing it
Jason Chin
committed

Commits on Sep 17, 2013

change default length / identiy cutoff
Jason Chin
committed

Commits on Sep 15, 2013

remove extra space
Jason Chin
committed
fix a missing statement
Jason Chin
committed
fix minor indentation problem
Jason Chin
committed
two protype scripts that works for both haploid and diploid assembly
Jason Chin
committed

Commits on Sep 13, 2013

another tigger with differnt layout algorithm for diploid genome
Jason Chin
committed

Commits on Sep 8, 2013

bundle assembler
Jason Chin
committed

Commits on Aug 17, 2013

using two multiprocess pools to temporary solving the python's shared
Jason Chin
committed

Commits on Aug 11, 2013

The old logic will tag some non-overlapped pairs as "contain" which
Jason Chin
committed

Commits on Aug 9, 2013

add some quick hack for avoiding generating consensus with large
Jason Chin
committed

Commits on Aug 7, 2013

add the parallel overlapper code
Jason Chin
committed

Commits on Aug 2, 2013

(1) dynamically allocate aln_range
Jason Chin
committed

Commits on Aug 1, 2013

changes for the parallel version of overlapper
Jason Chin
committed
Initial commit.
cschin
committed

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