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crazyhottommy authored Jul 9, 2020
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# ChIP-seq-analysis

### A pipeline
### Snakemake pipelines

I developed a Snakemake based ChIP-seq pipeline: [pyflow-ChIPseq](https://github.com/crazyhottommy/pyflow-ChIPseq).
and ATACseq pipeline: [pyflow-ATACseq](https://github.com/crazyhottommy/pyflow-ATACseq)

### Resources for ChIP-seq
1. [ENCODE: Encyclopedia of DNA Elements](https://www.encodeproject.org/) [ENCODExplorer](https://www.bioconductor.org/packages/release/bioc/html/ENCODExplorer.html): A compilation of metadata from ENCODE. A bioc package to access the meta data of ENCODE and download the raw files.
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