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Merge pull request #14 from yeroslaviz/master
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Update README.md
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crazyhottommy authored Jun 21, 2024
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Expand Up @@ -70,7 +70,7 @@ The IgG control is also fine, but because so little DNA is there, you might get
1. The most popular peak caller by Tao Liu: [MACS2](https://github.com/taoliu/MACS/). Now `--broad` flag supports broad peaks calling as well.

2. [TF ChIP-seq peak calling using the Irreproducibility Discovery Rate (IDR) framework](https://sites.google.com/site/anshulkundaje/projects/idr) and many [Software Tools Used to Create the ENCODE Resource](https://genome.ucsc.edu/ENCODE/encodeTools.html)
2. [TF ChIP-seq peak calling using the Irreproducibility Discovery Rate (IDR) framework](https://github.com/nboley/idr) and many [Software Tools Used to Create the ENCODE Resource](https://genome.ucsc.edu/ENCODE/encodeTools.html)
3. [SICER](http://home.gwu.edu/~wpeng/Software.htm) for broad histone modification ChIP-seq
4. [HOMER](http://homer.salk.edu/homer/ngs/peaks.html) can also used to call Transcription factor ChIP-seq peaks and histone
modification ChIP-seq peaks.
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