Documentation

Code quality and style

Unit tests and coverage

How to cite

Contributors

CPP SPM

This is a set of functions to fMRI analysis on a BIDS data set using SPM12.

This can perform:

• slice timing correction,

• spatial preprocessing:

  • realignment, coregistration func to anat, anat segmentation, normalization to MNI space

  • realignm and unwarp, coregistration func to anat, anat segmentation

• smoothing,

• Quality analysis:

  • for anatomical data
  • for functional data

• GLM at the subject level

• GLM at the group level à la SPM (meaning using a summary statistics approach).

Please see our documentation for more info.

The core functions are in the src folder.

Installation

Dependencies

Make sure that the following toolboxes are installed and added to the matlab path.

For instructions see the following links:

Dependencies	Used version
Matlab	20???
or octave	4.?
SPM12	v7487
Tools for NIfTI and ANALYZE image toolbox	NA
spmup	NA

Contributing

Feel free to open issues to report a bug and ask for improvements.

If you want to contribute, have a look at our contributing guidelines that are meant to guide you and help you get started. If something is not clear or you get stuck: it is more likely we did not do good enough a job at explaining things. So do not hesitate to open an issue, just to ask for clarification.

Contributors

Thanks goes to these wonderful people (emoji key):

OliColli 💻 🎨 📖

anege 💻 🎨

Mohamed Rezk 💻 👀 🎨

marcobarilari 💻 🎨 👀 📖 ⚠️ 🐛

Remi Gau 💻 📖 🚇 🎨 👀 🐛

Fede F. 🐛

CerenB 🐛 🖋 📖

This project follows the all-contributors specification. Contributions of any kind welcome!