run_tests_notebooks.yml

---
name: test notebooks

on:

    pull_request:
        branches:
        -   main
        paths:
        -   '**.m'
        -   .github/workflows/*system*
        -   lib

  # Allows you to run this workflow manually from the Actions tab
    workflow_dispatch:

jobs:

    system_tests_matlab:

    # only trigger update on upstream repo
        if: github.repository_owner == 'cpp-lln-lab'

        runs-on: ubuntu-22.04

        steps:
        -   name: Install dependencies
            run: |
                sudo apt-get -y -qq update
                sudo apt-get -y install unzip wget tree

        -   name: Install MATLAB
            uses: matlab-actions/setup-matlab@v2.2.0
            with:
          # MATLAB release to set up R2020a
                release: R2023a

        -   name: Clone bidspm
            uses: actions/checkout@v4
            with:
                submodules: recursive
                fetch-depth: 0

        -   name: Install SPM
            run: |
                git clone https://github.com/spm/spm12.git --depth 1

        -   name: Test notebooks
            uses: matlab-actions/run-command@v2.1.1
            with:
                command: |
                    root_dir = getenv('GITHUB_WORKSPACE');
                    addpath(fullfile(root_dir, 'spm12'));
                    cd(fullfile(root_dir, 'demos'));
                    run test_notebooks;