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[ENH] update initialisation #213

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Merged
merged 6 commits into from
Sep 10, 2022
Merged

[ENH] update initialisation #213

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8bf435f
update init
Remi-Gau Sep 9, 2022
8334de1
update doc
Remi-Gau Sep 9, 2022
1521b4f
fix tests
Remi-Gau Sep 9, 2022
752b686
fix doc
Remi-Gau Sep 9, 2022
b601db6
fix test and lint
Remi-Gau Sep 9, 2022
2a90d4a
update BIDS matlab
Remi-Gau Sep 10, 2022
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fix test and lint
  • Loading branch information
@Remi-Gau
Remi-Gau committed Sep 9, 2022
commit b601db608aa49e9d92fa493f40d51235c22a7a1f
2 changes: 1 addition & 1 deletion cpp_bids.m
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Expand Up @@ -23,7 +23,7 @@ function cpp_bids(varargin)
defaultAction = 'init';

addOptional(p, 'action', defaultAction, @ischar);
addOptional(p, 'verbose', true);
addParameter(p, 'verbose', true);

parse(p, varargin{:});

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3 changes: 2 additions & 1 deletion runTests.m
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Expand Up @@ -11,7 +11,8 @@ function runTests()
cd(thisPath);
fprintf('\nHome is %s\n', getenv('HOME'));

warning('OFF');
warning off;
more off;

addpath(fullfile(thisPath, 'lib', 'JSONio'));
addpath(fullfile(thisPath, 'lib', 'bids-matlab'));
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2 changes: 1 addition & 1 deletion src/checkCFG.m
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Expand Up @@ -188,7 +188,7 @@

checkCppBidsDependencies(cfg);

fieldsToSet.verbose = 0;
fieldsToSet.verbose = false;

fieldsToSet.useGUI = false;

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6 changes: 3 additions & 3 deletions tests/test_checkCFG.m
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Expand Up @@ -12,7 +12,7 @@ function test_checkCfgDefault()

%% set up
cfg.dir.output = fullfile(fileparts(mfilename('fullpath')), '..', 'output');
cfg.verbose = 0;
cfg.verbose = false;
cfg = checkCFG(cfg);

%% create test data
Expand All @@ -32,7 +32,7 @@ function test_checkCfgBasic()
%% set up
outputDir = fullfile(fileparts(mfilename('fullpath')), '..', 'output');

cfg.verbose = 0;
cfg.verbose = false;

cfg.subject.subjectNb = 1;
cfg.subject.runNb = 1;
Expand Down Expand Up @@ -109,7 +109,7 @@ function test_checkCfgBasic()
expected.subject.subjectNb = [];
expected.subject.ask = {'grp'; 'ses'; 'run'};

expected.verbose = 0;
expected.verbose = false;

expected.useGUI = false;

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2 changes: 1 addition & 1 deletion tests/utils/globalTestSetUp.m
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Expand Up @@ -2,7 +2,7 @@
%
% (C) Copyright 2020 CPP_BIDS developers

cfg.verbose = 0;
cfg.verbose = false;
cfg.subject.subjectNb = 1;
cfg.subject.runNb = 1;
cfg.task.name = 'test task';
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