Merge pull request #258 from cpp-lln-lab/dependabot/github_actions/ma… #160
Workflow file for this run
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| --- | |
| name: BIDS validator | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: ['*'] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| OCTFLAGS: --no-gui --no-window-system --silent | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '18' | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| - name: Make jsonread for octave | |
| run: | | |
| sudo apt-get -y -qq update | |
| sudo apt-get -y install octave | |
| sudo apt-get -y install liboctave-dev | |
| cd lib/JSONio | |
| mkoctfile --mex jsonread.c jsmn.c -DJSMN_PARENT_LINKS | |
| cd .. | |
| - name: Update octave path | |
| run: | | |
| octave $OCTFLAGS --eval "addpath(pwd); savepath();" | |
| octave $OCTFLAGS --eval "addpath(genpath(fullfile(pwd, 'lib'))); savepath();" | |
| octave $OCTFLAGS --eval "addpath(genpath(fullfile(pwd, 'src'))); savepath();" | |
| - name: Install BIDS validator | |
| run: | | |
| sudo npm install -g bids-validator | |
| - name: Create dummy dataset and validate it | |
| run: | | |
| cd tests/manualTests | |
| octave $OCTFLAGS --eval "test_makeRawDataset" | |
| bids-validator `pwd`/output/raw/ --ignoreNiftiHeaders |