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@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 209 52

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 63 21

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 57 18

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 33 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 18

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 43 15

Repositories

Showing 10 of 94 repositories
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    compomics/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,488 0 0 Updated May 8, 2025
  • compomics-rover Public archive

    A tool to visualize and validate quantitative proteomics data from different sources.

    compomics/compomics-rover’s past year of commit activity
    Java 0 0 2 0 Updated May 8, 2025
  • IM2Deep Public

    Collisional cross-section prediction for modified and multiconformational peptides

    compomics/IM2Deep’s past year of commit activity
    Python 10 Apache-2.0 2 1 0 Updated May 5, 2025
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 8 4 0 Updated Apr 28, 2025
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 63 Apache-2.0 21 0 1 Updated Apr 24, 2025
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 57 Apache-2.0 18 15 3 Updated Apr 16, 2025
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 27 Apache-2.0 10 6 (2 issues need help) 3 Updated Apr 15, 2025
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    compomics/ThermoRawFileParser’s past year of commit activity
    C# 209 Apache-2.0 52 13 1 Updated Apr 9, 2025
  • compomics.github.io Public

    Compomics github website.

    compomics/compomics.github.io’s past year of commit activity
    SCSS 0 MIT 1 0 0 Updated Apr 8, 2025
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 43 15 16 (12 issues need help) 0 Updated Apr 7, 2025
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