Pathmapper now has list of file objects and not just file names.#92

Merged

mr-c merged 55 commits intomasterfrom

Jun 30, 2016

Commits on Jun 2, 2016

Pathmapper now has list of file objects and not just file names. Job.py now
Peter Amstutz
committed

Commits on Jun 10, 2016

Merge branch 'master' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 3e1b02c..a2263a9
Peter Amstutz
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Merge commit '7f979d8dc6d664048fe585eeffc1080bd644cb34' into stagefiles
Peter Amstutz
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Commits on Jun 14, 2016

Input directory staging works.
Peter Amstutz
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Fix staging for Docker as well
Peter Amstutz
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Move getListing to process module. Start looking at capturing output to
Peter Amstutz
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Commits on Jun 15, 2016

Refactor path mapping/file staging for both setting up inputs and moving
Peter Amstutz
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Commits on Jun 20, 2016

Fix --cachedir to work with changes to file staging.
Peter Amstutz
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Commits on Jun 21, 2016

Tweak cwltest to accomodate Directory objects.
Peter Amstutz
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Commits on Jun 22, 2016

Adding convenience fields to file objects
Peter Amstutz
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Commits on Jun 23, 2016

Merge commit '51ad4bca0db3052d3bb333401f19d1cbf65eff46' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from a2263a9..8798dc8
Peter Amstutz
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Update to use 'location' URI consistently for identifying files and
Peter Amstutz
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Merge commit '049e6e624c2e986acb85c95b63414aea2e87733f' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 8798dc8..b449b3d
Peter Amstutz
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Unit tests pass
Peter Amstutz
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Add updater to draft-4.dev3
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from b449b3d..c55f733
Peter Amstutz
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Merge commit '7b42788f4f1a46381854c0797794398d72aba98d' into stagefiles
Peter Amstutz
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cwltest support for "location"
Peter Amstutz
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Merge branch 'master' into stagefiles
Peter Amstutz
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Merge branch 'master' into stagefiles
Peter Amstutz
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Commits on Jun 24, 2016

path -> location fixes for File and Directory. Working on passing conformance tests.
Peter Amstutz
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Fixing more path/location bugs and accomodations across versions.
Peter Amstutz
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Add fixup to updater for expressions in secondaryFiles.
Peter Amstutz
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Fix directory handling for location and MapperEnt changes. Fix cwltest to
Peter Amstutz
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Commits on Jun 27, 2016

Update updater so draft-2 still works.
Peter Amstutz
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Check for illegal characters in input file name.
Peter Amstutz
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Merge branch 'master' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 41c119b..4efa80b
Peter Amstutz
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Commits on Jun 28, 2016

Merge commit '6c174f0e1dfd18c18e58b9020f2048352ae2eaae' into stagefiles
Peter Amstutz
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Merge commit '09abb8b4cacccf0f4ceff5d1f0c5de692cb967d4' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 4efa80b..107d005
Peter Amstutz
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Merge commit '71794a710b27456f04493c89fc04f29d6905605f' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 107d005..56ef87a
Peter Amstutz
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Merge commit 'd47df4463c224c05238d58a366e0a37bef22ccf1' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 56ef87a..5239b16
Peter Amstutz
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Commits on Jun 29, 2016

Use stageFiles for InitialWorkDir
Peter Amstutz
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Pass tests for initial work dir.
Peter Amstutz
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Pathmapper wip
Peter Amstutz
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Merge commit 'c332dde31fd6bdee4fe00af9bb89646de1a068c2' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from 5239b16..a5976f3
Peter Amstutz
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Pathmapper handles unified listing/secondaryFiles.
Peter Amstutz
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Merge commit 'cb7f18c050334af7b964e84e03f25b975be0880f' into stagefiles
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from a5976f3..c6538ab
Peter Amstutz
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Add support for "writable" in InitialWorkDir
Peter Amstutz
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Squashed 'cwltool/schemas/' changes from c6538ab..afe31c1
Peter Amstutz
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Merge commit '2551f6a7229ca7b76d3cea15fdfbad035987143e' into stagefiles
Peter Amstutz
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Don't reset real files by accident.
Peter Amstutz
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