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Hi all!
If use current directory as an input, cwltool fails to set a basename for this folder:
WorkflowException: Invalid filename: '' contains illegal characters
If add basename manually to the input in job file, all works
cwltool version 1.0.20170413194156
tool.cwl
cwlVersion: v1.0
class: CommandLineTool
hints:
- class: DockerRequirement
dockerPull: ubuntu:latest
inputs:
control_dir:
type: Directory
outputs: []
baseCommand: [echo, 'hello']
job_fail.json
{
"control_dir": {"class": "Directory", "location": "."}
}
job_success.json
{
"control_dir": {"class": "Directory", "location": ".", "basename":"any"}
}
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