This repository contains code for analysing photometry data from behavioural tasks with a discrete trial structure.
The photometry_analysis jupyter notebook is a tutorial illustrating the analysis pipelines using example data in the data directory. The data organisation and preprocessing pipeline used to generate this data is in the data_organisation repository.
The code/analysis folder contains the same code as the notebook but organized into modules to facilitate maintainability and reuse. The analysis_script uses these modules to implement the same steps as the jupyter notebook.