Merge pull request #26 from JJ/master

Post commit hook to run hugo automatically.

Author: yochannah

.gitignore

@@ -1,2 +1,3 @@
 .DS_Store
+*~
 

content/posts/good-practices-code.md

@@ -0,0 +1,30 @@
+---
+title: "Good practices & good quality code"
+date: 2018-05-10
+---
+
+Here are a few things that will help you create good habit when
+creating scientific code and thus produce better quality code.
+
+## Resources
+
+* [Software carpentry](https://software-carpentry.org/) - resources to
+  learn and teach coding practices for scientists.
+*
+  [Scientific computing for the rest of us](https://github.com/tpoisot/ScientificComputingForTheRestOfUs)
+  
+## Sites to host code 
+
+* [FigShare](http://figshare.com), hosts code and issues DOIs.
+* [Open Science Framework](https://osf.io), offers resources, storage,
+  even virtual machines.
+* [GitXiv](https://gitxiv.com) Matches code in Github with articles in
+  ArXiV. 
+  
+## Articles with best practices
+
+* [Good enough practices in scientific computing](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510), PLoS Comput Biol, 2017.
+
+* [Best Practices in Scientific Computing, Wilson et al., 2014](http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745)
+ 
+ 

docs/index.xml

@@ -6,11 +6,21 @@
     <description>Recent content in Code Is Science : Welcome! on Code Is Science</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-gb</language>
-    <lastBuildDate>Sun, 29 Oct 2017 15:16:54 +0100</lastBuildDate>
+    <lastBuildDate>Thu, 10 May 2018 00:00:00 +0000</lastBuildDate>
 
 	<atom:link href="http://www.codeisscience.com/index.xml" rel="self" type="application/rss+xml" />
 
 
+    <item>
+      <title>Good practices &amp; good quality code</title>
+      <link>http://www.codeisscience.com/posts/good-practices-code/</link>
+      <pubDate>Thu, 10 May 2018 00:00:00 +0000</pubDate>
+      
+      <guid>http://www.codeisscience.com/posts/good-practices-code/</guid>
+      <description>Here are a few things that will help you create good habit when creating scientific code and thus produce better quality code.
+Resources  Software carpentry - resources to learn and teach coding practices for scientists. * Scientific computing for the rest of us   Sites to host code  FigShare, hosts code and issues DOIs. Open Science Framework, offers resources, storage, even virtual machines. GitXiv Matches code in Github with articles in ArXiV.</description>
+    </item>
+    
     <item>
       <title>Mozfest Session 2017</title>
       <link>http://www.codeisscience.com/posts/mozfest-session-2017/</link>

docs/posts/index.xml

@@ -6,11 +6,21 @@
     <description>Recent content in Posts on Code Is Science</description>
     <generator>Hugo -- gohugo.io</generator>
     <language>en-gb</language>
-    <lastBuildDate>Sun, 29 Oct 2017 15:16:54 +0100</lastBuildDate>
+    <lastBuildDate>Thu, 10 May 2018 00:00:00 +0000</lastBuildDate>
 
 	<atom:link href="http://www.codeisscience.com/posts/index.xml" rel="self" type="application/rss+xml" />
 
 
+    <item>
+      <title>Good practices &amp; good quality code</title>
+      <link>http://www.codeisscience.com/posts/good-practices-code/</link>
+      <pubDate>Thu, 10 May 2018 00:00:00 +0000</pubDate>
+      
+      <guid>http://www.codeisscience.com/posts/good-practices-code/</guid>
+      <description>Here are a few things that will help you create good habit when creating scientific code and thus produce better quality code.
+Resources  Software carpentry - resources to learn and teach coding practices for scientists. * Scientific computing for the rest of us   Sites to host code  FigShare, hosts code and issues DOIs. Open Science Framework, offers resources, storage, even virtual machines. GitXiv Matches code in Github with articles in ArXiV.</description>
+    </item>
+    
     <item>
       <title>Mozfest Session 2017</title>
       <link>http://www.codeisscience.com/posts/mozfest-session-2017/</link>

docs/sitemap.xml

@@ -2,6 +2,11 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
   xmlns:xhtml="http://www.w3.org/1999/xhtml">
 
+  <url>
+    <loc>http://www.codeisscience.com/posts/good-practices-code/</loc>
+    <lastmod>2018-05-10T00:00:00+00:00</lastmod>
+  </url>
+  
   <url>
     <loc>http://www.codeisscience.com/posts/mozfest-session-2017/</loc>
     <lastmod>2017-10-29T15:16:54+01:00</lastmod>
@@ -14,7 +19,7 @@
 
   <url>
     <loc>http://www.codeisscience.com/</loc>
-    <lastmod>2017-10-29T15:16:54+01:00</lastmod>
+    <lastmod>2018-05-10T00:00:00+00:00</lastmod>
   </url>
 
   <url>
@@ -23,7 +28,7 @@
 
   <url>
     <loc>http://www.codeisscience.com/posts/</loc>
-    <lastmod>2017-10-29T15:16:54+01:00</lastmod>
+    <lastmod>2018-05-10T00:00:00+00:00</lastmod>
     <priority>0</priority>
   </url>
 

post-commit

@@ -0,0 +1,7 @@
+#!/bin/bash
+
+if git diff --name-only HEAD^ HEAD | grep content
+then
+        echo "Running hugo"
+        hugo
+fi