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Add Make/Just/Task migration guides; fix two Atmos config bugs - #2896
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Extend the atmos-migration skill and docs to cover moving task-runner orchestration (Make, Just, Task) to Atmos custom commands and workflows, alongside the existing native-Terraform/Terraform-Workspaces coverage. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
…on-skill # Conflicts: # agent-skills/skills/atmos-migration/SKILL.md
…os.d subcommands A directory's own inline atmos.yaml commands: entry named the same as a command discovered from git-root .atmos.d (e.g. an unrelated outer project's dev tooling) silently inherited that command's subcommand tree and other subcommand-referencing fields such as default:. Treat a leaf command with no commands: key as fully authoritative instead of merging it field-by-field against the discovered default. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
…e_pattern createComponentStackMap derived a component's logical stack name via a stricter, older code path that predated zero-config filename-based stack naming (#1934), so atmos validate stacks hard-failed on any repo that terraform plan, list stacks, and describe component already resolved stacks for fine, including this repo's own examples/native-terraform. Reuse resolveStackName's precedence (manifest name > name_template > name_pattern > filename) instead. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
…ides Field-testing the new Makefile/Justfile/Taskfile migration references against real fixtures and the real atmos binary surfaced several gaps: from-native-terraform.md's Shape B recipe used a component name that never resolved (component names must match the physical directory); workflows.base_path has no default and needs to be called out; an orphaned [private] Justfile recipe and Just's command-echo behavior weren't addressed; from-taskfile.md overstated the need for `import:` when atmos.d/.atmos.d is auto-discovered; and the migration docs sidebar order contradicted the pages' own sidebar_position values. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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Included review availability: Your plan provides up to 4 included reviews per hour; 1 remains after this review. 📝 WalkthroughWalkthroughThe change adds task-runner migration guidance, introduces hidden-command help, refines command and stack validation behavior, and preserves prefixed output across partial writes. ChangesMigration guidance
Hidden command help
Runtime validation behavior
Buffered output handling
Estimated code review effort: 4 (Complex) | ~45 minutes Merge Risk: 🔵 Low · up to The migration guidance is otherwise mergeable, but the Justfile instructions may incorrectly classify a helper with only transitive private dependencies as orphaned, so the documentation owner should follow up before relying on that guidance. Suggested labels: 🚥 Pre-merge checks | ✅ 4 | ❌ 1❌ Failed checks (1 warning)
✅ Passed checks (4 passed)
Full details: Docstring CoverageExplanation Docstring coverage is 38.46% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 39 functions across 14 files. (1 skipped: 1 unsupported.) ✨ Finishing Touches🧪 Generate unit tests (beta)
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Actionable comments posted: 5
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Inline comments:
In `@agent-skills/skills/atmos-migration/references/from-justfile.md`:
- Around line 42-45: Update the Common Problems link in the migration
instructions to use the fragment
`#interpolation-looks-like-atmos-templates-but-is-not`, matching the heading at
line 139; do not change the surrounding parameter-conversion guidance.
In `@agent-skills/skills/atmos-migration/references/from-makefile.md`:
- Around line 134-135: In every listed single-directory Terraform example,
update the atmos command’s component argument from infra to terraform, matching
the physical terraform/ directory:
agent-skills/skills/atmos-migration/references/from-makefile.md:134-135;
agent-skills/skills/atmos-migration/references/from-justfile.md:101-102;
agent-skills/skills/atmos-migration/references/from-taskfile.md:101-102;
website/docs/migration/makefile.mdx:102-103;
website/docs/migration/justfile.mdx:98-99;
website/docs/migration/taskfile.mdx:71-72.
- Around line 192-195: Update
agent-skills/skills/atmos-migration/references/from-makefile.md lines 192-195 to
remove the required import step for atmos.d/commands.yaml. In
website/docs/migration/taskfile.mdx line 33, remove “+ root import:” from the
mapping table; at lines 176-178, state that files in the listed discovery
directories require no import; and at line 206, revise the checklist to
distinguish auto-discovered files from manually imported files.
In `@agent-skills/skills/atmos-migration/references/from-taskfile.md`:
- Around line 42-44: Update the migration guidance for converting cmds entries
so custom Atmos commands such as atmos build remain type: shell. Reserve type:
atmos only for native Atmos verbs, such as terraform plan, and revise the
condition in the surrounding conversion instructions accordingly.
In `@website/docs/migration/taskfile.mdx`:
- Around line 179-181: Update the migration documentation to state that users
must explicitly configure workflows.base_path, using "stacks/workflows" as the
example value, and remove the claim that this path has a default or requires no
additional setup.
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agent-skills/AGENTS.mdagent-skills/skills/atmos-migration/SKILL.mdagent-skills/skills/atmos-migration/references/from-justfile.mdagent-skills/skills/atmos-migration/references/from-makefile.mdagent-skills/skills/atmos-migration/references/from-native-terraform.mdagent-skills/skills/atmos-migration/references/from-taskfile.mdinternal/exec/validate_stacks.gointernal/exec/validate_stacks_test.gopkg/config/command_merge_core_test.gopkg/config/load.gowebsite/docs/migration/justfile.mdxwebsite/docs/migration/makefile.mdxwebsite/docs/migration/taskfile.mdxwebsite/sidebars.js
- Use the terraform component name (matching the physical terraform/ directory) instead of the never-resolving infra in every single-directory Makefile/Justfile/Taskfile example, consistent with the from-native-terraform.md Shape B fix. - Reserve type: atmos for native Atmos verbs only in from-taskfile.md's Shape A guidance; calling another custom command still needs type: shell. - Fix from-justfile.md's Common Problems link fragment (verified against the actual github-slugger algorithm). - Stop telling readers import: is required for auto-discovered atmos.d/.atmos.d files in from-makefile.md and website/docs/migration/taskfile.mdx. - Document that workflows.base_path has no default in website/docs/migration/taskfile.mdx, matching the equivalent fix already applied to the agent-skill references. - Normalize from-native-terraform.md's odd-space (3/5/7) list-continuation and nested-YAML indentation to even, matching the EditorConfig multiple-of-2 rule applied to the other reference files earlier in this branch. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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Dependency Review✅ No vulnerabilities or license issues found.Scanned Files
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Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #2896 +/- ##
==========================================
+ Coverage 83.63% 83.64% +0.01%
==========================================
Files 1941 1941
Lines 189852 189893 +41
==========================================
+ Hits 158779 158838 +59
+ Misses 23151 23131 -20
- Partials 7922 7924 +2
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Custom commands can now set `hidden: true` to stay runnable (directly, as a `default:` target, or from another command's steps) while dropping out of `--help` listings, completions, and the AI `atmos_list_commands` tool. This closes the gap the Just/Task/Make migration guides used to call "no match", where a `[private]`/`internal: true` recipe or task needed to be reusable across callers or invoked directly for debugging rather than folded into a single caller's step. Add a matching `--help=hidden` topic to reveal a command's hidden subcommands on demand; the default-help hint only mentions it when a command actually has one, to avoid cluttering the common case. Refresh the affected migration guides (website + agent-skills mirrors) to point at `hidden: true` instead of the old "no match" guidance, and add previously-missing coverage for Task's `internal: true` flag. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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The Check Markdown Links workflow failed on the SOURCE_DATE_EPOCH citation in docs/prd/archive-step.md with "Connection refused". The domain refuses connections from every network tested (CI, curl, and WebFetch), not just this path or CI specifically — an upstream outage, not a broken/moved link — so exclude it the same way other known-flaky external docs are already handled in this file. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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Actionable comments posted: 3
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Inline comments:
In `@cmd/cmd_utils_test.go`:
- Around line 2428-2462: Replace the POSIX printf and shell-redirection sentinel
in TestHiddenCommandStillExecutesDirectly with an existing platform-independent
execution seam or Go-native helper process, while preserving verification that
the hidden command runs its steps; apply the same replacement to
cmd/cmd_utils_test.go lines 2503-2540 for the hidden default-child test.
In `@lychee.toml`:
- Around line 192-197: Replace the broad reproducible-builds.org exclusion in
the Lychee configuration with an exact URL or narrowly scoped path pattern
matching only the affected link referenced by docs/prd/archive-step.md. Keep
unrelated links on the domain subject to link checking.
In `@website/docs/migration/justfile.mdx`:
- Line 110: Align the Terraform component argument with the legacy layout shown
in each example: update website/docs/migration/justfile.mdx lines 110-110 and
133-133, website/docs/migration/makefile.mdx lines 114-114, and
website/docs/migration/taskfile.mdx lines 84-84. Either parameterize the
component variable or use a matching example component such as vpc/database, and
include the corresponding components.terraform.base_path or Atmos layout so the
command targets the documented directory.
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agent-skills/skills/atmos-introspection/SKILL.mdagent-skills/skills/atmos-migration/references/from-justfile.mdagent-skills/skills/atmos-migration/references/from-makefile.mdagent-skills/skills/atmos-migration/references/from-native-terraform.mdagent-skills/skills/atmos-migration/references/from-taskfile.mdcmd/cmd_utils.gocmd/cmd_utils_test.gocmd/help_template.gocmd/help_topics.gocmd/help_topics_render.gocmd/help_topics_test.godocs/prd/topic-specific-cli-help.mdlychee.tomlpkg/datafetcher/schema/atmos/config/1.0.jsonpkg/schema/command.gowebsite/docs/cli/configuration/commands/command/commands.mdxwebsite/docs/cli/configuration/commands/command/index.mdxwebsite/docs/migration/justfile.mdxwebsite/docs/migration/makefile.mdxwebsite/docs/migration/native-terraform.mdxwebsite/docs/migration/taskfile.mdxwebsite/docs/migration/terraform-workspaces.mdx
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- agent-skills/skills/atmos-migration/references/from-makefile.md
- lychee.toml: narrow the reproducible-builds.org exclude to the exact SOURCE_DATE_EPOCH path instead of the whole domain, so other links on that domain stay covered by the link check. - justfile.mdx/makefile.mdx/taskfile.mdx (+ agent-skills mirrors): the "after" Terraform-apply examples ran `terraform apply terraform`, confusing the atmos verb with a component literally named "terraform" that didn't match the shown legacy `terraform/` directory layout. Rename the placeholder component to `infra` and add a one-line note on where it maps to under `components.terraform.base_path`. - cmd_utils_test.go: document why the hidden-command tests' printf/ redirection is cross-platform (Atmos's TaskTypeShell runs through the in-process mvdan/sh interpreter, not the host shell) rather than replacing it — flagged as a platform-specific-binary risk, but it isn't one. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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TestExecuteTerraformConcurrentHooksUseNodeWriters was failing in CI (reproduced locally under `go test -race -count=200`, ~30% failure rate): concurrent nodes' hook output was interleaving mid-record instead of staying grouped per node. writeLine() acquired the shared writeMu once per line, but a single Write() call can flush multiple buffered lines at once (e.g. a \r-terminated segment held back by a prior Write, completed by the next). Between the two per-line lock acquisitions for one node's burst, another node's own burst could interleave into the shared writer. Fixed by collecting a burst's complete lines up front and writing them under one writeMu acquisition (writeLinesLocked), so a whole burst lands as one contiguous block. Preserves the existing partial-write-error retry behavior: a failed line and everything after it, plus any trailing partial content, are restored to the buffer for the next Write/Flush to retry. Verified with `go test ./pkg/scheduler/adapters/... -race -count=500` (0 failures, was reproducibly failing before) and the full pkg/io suite, race detector, 5x. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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Inline comments:
In `@agent-skills/skills/atmos-migration/SKILL.md`:
- Line 285: Add terminal periods to the bullets describing from-mise.md and
from-aqua.md in the Atmos toolchain resources list, without changing their
wording or surrounding content.
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what
atmos-migrationagent skill and website docs with new migration references and tutorials for Makefiles, Justfiles, and Taskfile.yml (go-task), alongside the existing native-Terraform/Terraform-Workspaces/remote-state-bridge coverage.pkg/config: a directory's own inlinecommands:entry no longer silently inherits an unrelated project's same-named.atmos.dcommand's subcommand tree (or fields likedefault:) purely because a git-root.atmos.dhappens to define a command with the same name.internal/exec:atmos validate stacksno longer requiresstacks.name_template/stacks.name_patternto be set — it now resolves stack names the same wayterraform plan,list stacks, anddescribe componentalready do (manifestname:>name_template>name_pattern> filename).atmosbinary: afrom-native-terraform.mdrecipe that referenced a component name that never resolved, a missingworkflows.base_pathcallout, Justfile/Taskfile edge cases (orphaned[private]recipes, command-echo differences,includes:guidance), and a sidebar ordering mismatch.why
examples/native-terraform— the skill's own canonical reference example — failedatmos validate stacksout of the box despite being fully valid config; the requirement was a stale code path that predated zero-config filename-based stack naming (feat: stack name identity with zero-config filename fallback #1934) and was never updated when that landed elsewhere in the CLI.references
atmosbinary.Summary by CodeRabbit
New Features
--help=hiddento display hidden commands while keeping them directly executable..envfiles.Bug Fixes
Documentation