LSCore needs to be a template class (so that it can hold gshop objects)

.gitignore

@@ -32,6 +32,8 @@ Docs/sphinx/build
 # catalyst/libsim
 Tutorials/Amr/Advection_AmrLevel/Exec/SingleVortex/*.png
 Tutorials/Amr/Advection_AmrCore/Exec/SingleVortex/*.png
+Tutorials/EB/LevelSet/Exec/ImpFunc*
+Tutorials/EB/LevelSet/Exec/LevelSet*
 *.vth
 *.vti
 *.pvd

Src/EB/AMReX_EB2_IF_Intersection.H

@@ -21,7 +21,7 @@ namespace IIF_detail {
     {
         return f(p);
     }
-    
+
     template <typename F, typename... Fs>
     Real do_min (const RealArray& p, F&& f, Fs&... fs)
     {

Src/EB/AMReX_EB_LSCore.H

@@ -28,6 +28,8 @@ class AmrMeshInSituBridge;
 
 namespace amrex {
 
+
+template <class F>
 class LSCore
     : public amrex::AmrCore
 {
@@ -39,7 +41,7 @@ public:
 
     // Constructor - reads amr in parameters from inputs file
     //             - sizes multilevel arrays and data structures
-    LSCore ();
+    LSCore (EB2::GeometryShop<F> gshop);
     virtual ~LSCore ();
 
     // Initializes multilevel data
@@ -128,6 +130,9 @@ private:
     Vector<MultiFab>  level_set;
     Vector<LSFactory> ls_factory;
 
+
+    int eb_pad;
+
     // This is essentially a 2*DIM integer array storing the physical boundary
     // condition types at the lo/hi walls in each direction
     BCRec bcs;

Src/EB/AMReX_EB_LSCore.cpp → Src/EB/AMReX_EB_LSCoreI.H

@@ -84,19 +84,16 @@ void LSCore::InitData () {
         InitFromScratch(time);
         AverageDown();
 
-        if (chk_int > 0) {
+        if (chk_int > 0)
             WriteCheckpointFile();
-        }
 
-    }
-    else {
+    } else {
         // restart from a checkpoint
         ReadCheckpointFile();
     }
 
-    if (plot_int > 0) {
+    if (plot_int > 0)
         WritePlotFile();
-    }
 }
 
 
@@ -146,8 +143,12 @@ void LSCore::MakeNewLevelFromScratch (int lev, Real time, const BoxArray & ba,
     const int nghost = 1;
 
     level_set[lev].define(ba, dm, ncomp, nghost);
-    // NOTE: use move semantics since LSFactory contains unique_ptrs
-    ls_factory[lev] = std::move(LSFacory(0, ));
+    // NOTE: use move semantics since LSFactory contains unique_ptrs.
+    int levelset_pad    = 1;
+    int levelset_eb_pad = 1;
+    ls_factory[lev] = std::move(
+        LSFacory(lev, 1, 1, levelset_pad, levelset_eb_pad, ba, geom[lev], dm)
+        );
 
     const Real * dx = geom[lev].CellSize();
 
@@ -243,34 +244,13 @@ void LSCore::ErrorEst (int lev, TagBoxArray& tags, Real time, int ngrow) {
 // read in some parameters from inputs file
 void LSCore::ReadParameters () {
 
-
     /************************************************************************
      * Parse inputs                                                         *
      ***********************************************************************/
 
+    ParmParse pp("eb_amr");
+    pp.query("eb_pad", eb_pad);
 
-    {
-        ParmParse pp("particles");
-
-        int n_part;
-        Vector<Real> pos, rad;
-
-        pp.query("n_particles", n_part);
-        pp.getarr("positions", pos, 0, 3 * n_part);
-        pp.getarr("radii", rad, 0, n_part);
-
-
-        // Convert input arrays to vectors of type particle_info
-        int i_part = 0;
-        for(int i = 0; i + 2 < pos.size(); i += 3) {
-            particle_info particle;
-
-            particle.pos = RealVect(pos[i], pos[i+1], pos[i+2]);
-            particle.radius = rad[i_part];
-            particle_data.push_back(particle);
-            i_part ++;
-        }
-    }
 }
 
 
@@ -326,8 +306,8 @@ void LSCore::FillPatch (int lev, Real time, MultiFab& mf, int icomp, int ncomp)
 void LSCore::FillCoarsePatch (int lev, Real time, MultiFab& mf, int icomp, int ncomp) {
     BL_ASSERT(lev > 0);
 
-    PhysBCFunct cphysbc(geom[lev-1],bcs,BndryFunctBase(phifill));
-    PhysBCFunct fphysbc(geom[lev  ],bcs,BndryFunctBase(phifill));
+    PhysBCFunct cphysbc(geom[lev-1], bcs, BndryFunctBase(phifill));
+    PhysBCFunct fphysbc(geom[lev  ], bcs, BndryFunctBase(phifill));
 
     Interpolater * mapper = & cell_cons_interp;
 

Src/EB/AMReX_EB_levelset.H

@@ -21,10 +21,13 @@ class LSFactory {
     private:
 
         // MultiFab pointers storing level-set data
-        //    -> ls_phi:   nodal MultiFab storing signed distance function to the nearest wall
-        //    -> ls_valid: cell-centered iMultiFab storing integer flags assuming the following values:
+        //    -> ls_phi: nodal MultiFab storing signed distance function to the
+        //               nearest wall
+        //    -> ls_valid: cell-centered iMultiFab storing integer flags
+        //                 assuming the following values:
         //         -1 : not all nodes around cell have been initialized
-        //          0 : none of the cell's neighbours contain negative vlaues of ls_phi on its nodes
+        //          0 : none of the cell's neighbours contain negative vlaues of
+        //              ls_phi on its nodes
         //          1 : the cell is in the neighbourhood of phi < 0
 
         std::unique_ptr<MultiFab>  ls_grid;