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  • PSSMconservation Public

    Get conservation alphabet for protein sequences from their PSSMs

    Jupyter Notebook Updated Jan 7, 2025

  • InformationAccretion Public

    Compute Information Accretion of ontology terms from a dataset

    Python 7 2 GNU General Public License v3.0 Updated Jun 30, 2024

  • GOdatasets Public

    Process Gene Ontology annotation data

    Python 1 GNU General Public License v3.0 Updated May 29, 2024

  • CAFA-evaluator Public

    Forked from BioComputingUP/CAFA-evaluator

    A Python Tool for Benchmarking Ontological Classification Methods

    Python GNU General Public License v3.0 Updated May 18, 2024

  • bi-est Public

    Estimating Bias in semi-supervised learning

    Jupyter Notebook 1 MIT License Updated Mar 20, 2024

  • bi-est-python Public

    Estimate bias in semisupervised data via nested Expectation Maximization

    Jupyter Notebook 1 1 MIT License Updated Feb 8, 2024

  • CAFA2_matlab22 Public

    Forked from yuxjiang/CAFA2

    Matlab Evaluation codes for the 2nd CAFA experiment

    MATLAB MIT License Updated Apr 5, 2023

  • pytorch-install-test Public

    Scripts to test installation of GPU-enabled Pytorch and tensorboard

    Python GNU General Public License v3.0 Updated Nov 21, 2022

  • pseqsid Public

    Forked from amaurypm/pseqsid

    Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.

    Rust MIT License Updated Jul 1, 2022

  • PytorchNN_templates Public

    Simple templates for training neural networks in Pytorch

    Jupyter Notebook Updated Jul 7, 2021

  • EvolveGCN Public

    Forked from IBM/EvolveGCN

    Code for EvolveGCN: Evolving Graph Convolutional Networks for Dynamic Graphs

    Python Apache License 2.0 Updated Nov 20, 2019

  • pytorch_geometric Public

    Forked from pyg-team/pytorch_geometric

    Geometric Deep Learning Extension Library for PyTorch

    Python MIT License Updated May 31, 2019

  • D2DRNN Public

    Updated Dec 4, 2018

  • code2inv Public

    Forked from PL-ML/code2inv

    Code2Inv: Learning Loop Invariants for Program Verification

    OCaml Updated Oct 26, 2018

  • neurosat Public

    Forked from dselsam/neurosat

    NeuroSAT: Learning a SAT Solver from Single-Bit Supervision

    Python Apache License 2.0 Updated May 10, 2018

  • vminspect Public

    Forked from noxdafox/vminspect

    Tools for inspecting VM disk images

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 28, 2018

  • YelpRecSys Public

    Data Mining final project: Recommender System for Yelp dataset

    HTML Updated Dec 15, 2017

  • tf Public

    Forked from davheld/tf

    A custom version of the ros/tf package, with small API changes. Used by some the our code, until we migrate to TF2.

    C++ Updated Apr 17, 2014