NZTheileria version 1.0

NZTheileria contains the implementation of the MCMC and Gillespie simulation algorithms detailed in the accompanying paper Jewell CP, Brown RG (2015) Bayesian data assimilation provides rapid decision support for vector-borne diseases. J. Roy. Soc. Interface. In press 2015-06-02.

Please see the README.md file included in the package for details of C++ library dependencies.

infer-ausei version 4.0

infer-ausei version 4.0 is designed for inference on a dynamical model of equine influenza in Australia. It implements a susceptible-infected-onset model at the property level, incorporating number of horses, property area, distance between properties, and the effect of vaccination. A within-property SEIR model is used to represent how infectivity changes with time -- hence no "R" compartment is used in the property-level model. Rather, properties "run out" of infectiousness once all horses have recovered with solid immunity.

See README for build instructions and $(top_srcdir)/doc/model.pdf for model details.