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A tool for CNV calling and visualization

Python 1 Updated Nov 11, 2024

Code behind re-development of online ScotPHO profiles shiny app

R 8 Updated Jan 8, 2025

ScotPHO profiles tool code

R 81 49 Updated Oct 17, 2024

What you need to process the Quarterly DepMap-Omics releases from Terra

HTML 113 22 Updated Jan 2, 2025

存放「玩转dash」公众号部分文章对应附件内容

Python 27 2 Updated Nov 5, 2024

A Shiny framework for workflow management and data visualization

R 34 6 Updated Oct 16, 2023

VCF Observer is a VCF file analysis, comparison, and visualization tool.

Python 1 Updated Oct 4, 2024

python plotly Circos from VCF

Python 32 8 Updated Jun 20, 2024

Applied Computational Genomics Course at UU: Spring 2020

HTML 954 212 Updated Apr 5, 2024

CNV Rapid Aberration Detection And Reporting

R 11 7 Updated Mar 2, 2021

🐞 Convert NCBI taxonomy dump into lineages

Python 143 29 Updated Apr 4, 2022

https://www.sc-best-practices.org

Jupyter Notebook 811 195 Updated Nov 4, 2024

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Python 250 94 Updated Jan 6, 2025

Lightweight pipeline for processing droplet-based single-cell RNA-seq data

Python 17 6 Updated Nov 4, 2020

omim database

Python 25 10 Updated Jun 13, 2024

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

HTML 70,551 14,807 Updated Jan 1, 2025

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

Python 106 34 Updated Nov 16, 2024
R 51 28 Updated Jan 11, 2023

Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.

Python 32 17 Updated Jun 18, 2023

Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes

HTML 11 3 Updated Nov 14, 2022

Tools for visualising microbial community amplicon data

R 68 24 Updated May 21, 2024

Basic Machine Learning and Deep Learning

Python 5,280 3,175 Updated Jun 15, 2024

Chinese Translation for Machine Learning Infographics

Python 3,379 930 Updated Sep 10, 2018

[UNMAINTAINED] 非监督特征学习与深度学习中文教程,该版本翻译自新版 UFLDL Tutorial 。建议新人们去学习斯坦福的CS231n课程,该门课程在网易云课堂上也有一个配有中文字幕的版本。

351 118 Updated Mar 13, 2018

鉴于我没有时间继续写这个东西,这个项目暂时废止

Jupyter Notebook 840 317 Updated Mar 24, 2017

Machine Learning Yearning 中文版 - 《机器学习训练秘籍》 - Andrew Ng 著

CSS 7,756 1,520 Updated Oct 6, 2022

Deep Learning Book Chinese Translation

TeX 35,947 9,113 Updated Dec 3, 2019

An R package for classification of immune subtypes, in cancer, using gene expression data.

R 44 23 Updated Dec 18, 2024

This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".

Jupyter Notebook 19 12 Updated Aug 6, 2019

A standalone end-to-end data analysis pipeline for Duplex Sequencing

HTML 21 9 Updated Oct 25, 2023
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