remove unused dependencies

[MoralCode]

Description
This change:

1. removes several dependencies that were seemingly never used
2. relocates a couple of dependencies to either the devdependencies area, or removes them since they are transitive dependencies

This PR is a major step towards resolving #3334 (and in future, updating dependencies)

Notes for Reviewers

Signed commits

• Yes, I signed my commits.

I should probably squash these commits

[sgoggins]

@MoralCode : Can we walk through this one. I see that most of them are actually not used if we are not running the ML workers ... but I also want to make sure that we possibly use this cleanup to factor the ML workers into an optional Augur subpackage or something .. ?

[MoralCode]

None of them should be used, period. For basically every single one of these, I ctrl-F-ed after the name, and looked to see if we were importing it anywhere throughout the entire codebase.

I did also have the idea of making it an optional sub package too, but I'm not sure how that works

[MoralCode]

some of these are for sure still being used by the ml workers

"scikit-image==0.19.1",
"scikit-learn==1.5.0",
sklearn-crfsuite

h5py is  imported by keras (transitive) so can prob be left out

[MoralCode]

needs rebase

[sgoggins]

Rerunning failed end to end test.

[sgoggins]

LGTM