chore: Python 3.12 (SCE-16) #3376
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| name: Push Tests | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: "*" | |
| env: | |
| JEST_ENV: prod | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: | | |
| git fetch --depth=1 origin +${{github.base_ref}} | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Node cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node- | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8 | |
| pip install black | |
| cd client | |
| npm install | |
| - name: Format with black and lint with flake8 | |
| run: | | |
| make lint-server | |
| - name: Lint src with eslint | |
| working-directory: ./client | |
| run: | | |
| npx eslint src __tests__ | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.12 (pyenv) # pyenv needed for mlflow in cli annotate tests | |
| uses: gabrielfalcao/pyenv-action@v9 | |
| with: | |
| default: 3.12 | |
| command: pip install -U pip # upgrade pip after installing python | |
| - run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests | |
| - name: Python cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Node cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node- | |
| - name: Install dependencies | |
| run: make pydist install-dist dev-env-server | |
| - name: Unit tests | |
| run: | | |
| make unit-test-server unit-test-client | |
| bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k server -cF server,python,unitTest | |
| cd client && ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,unitTest | |
| smoke-tests: | |
| runs-on: macos-latest | |
| timeout-minutes: 20 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Python cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Node cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node- | |
| - name: Install dependencies | |
| run: | | |
| pip install setuptools | |
| make pydist install-dist | |
| - name: Smoke tests (without annotations feature) | |
| run: | | |
| cd client && make smoke-test | |
| ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTest | |
| # TODO: reinstate: https://github.com/chanzuckerberg/cellxgene/issues/2544 | |
| # smoke-tests-annotations: | |
| # runs-on: ubuntu-latest | |
| # timeout-minutes: 20 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Set up Python 3.9 | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: 3.9 | |
| # - name: Python cache | |
| # uses: actions/cache@v1 | |
| # with: | |
| # path: ~/.cache/pip | |
| # key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-pip- | |
| # - name: Node cache | |
| # uses: actions/cache@v1 | |
| # with: | |
| # path: ~/.npm | |
| # key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-node- | |
| # - name: Install dependencies | |
| # run: make pydist install-dist | |
| # - name: Smoke tests (with annotations feature) | |
| # run: | | |
| # cd client && make smoke-test-annotations | |
| # ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTestAnnotations |