expanded use of snakemake.params #212
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| name: Lint and test | |
| on: [push] | |
| env: | |
| PYTHONPATH: . | |
| jobs: | |
| lint_and_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| id: setup-python | |
| with: | |
| python-version: "3.9" | |
| - run: pip install pipenv | |
| - name: Cache virtualenvs | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.local/share/virtualenvs/ | |
| key: ${{ runner.os }}-python-${{ steps.setup-python.outputs.python-version }}-pipenv-${{ hashFiles('Pipfile.lock') }} | |
| - run: pipenv sync --dev | |
| - name: Cache Pre-commit for format checking | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-3|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Check formatting | |
| run: pipenv run pre-commit run --all-files --show-diff-on-failure | |
| - run: pipenv run pytest |