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Fixed script name for sinline as the original name caused failure. Ma… #23

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Fixed script name for sinline as the original name caused failure. Ma… #23

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Fixed script name for sinline as the original name caused failure. Ma…
Nov 22, 2019
2c5b88c
Fix: Add date/username to temp file name
RyanrDavies Mar 5, 2020
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13 changes: 7 additions & 6 deletions sinline
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Original file line number Diff line number Diff line change
Expand Up @@ -69,12 +69,13 @@ if [ -z "${sbatch_args}" ]; then
sbatch_args="--time=00:30:00"
fi

echo '#!/bin/bash' > /tmp/bash_script.sh
echo '#SBATCH -o sbatch_stdout.log' >> /tmp/bash_script.sh
echo '#SBATCH -e sbatch_stderr.log' >> /tmp/bash_script.sh
echo "${cmd}" >> /tmp/bash_script.sh
echo '#!/bin/bash' > /tmp/scription.sh
echo '#SBATCH -o sbatch_stdout.log' >> /tmp/scription.sh
echo '#SBATCH -e sbatch_stderr.log' >> /tmp/scription.sh
echo "${cmd}" >> /tmp/scription.sh
chmod u+x /tmp/scription.sh # make sure it is executable

sbatch --wait ${sbatch_args} -w ${node} /tmp/bash_script.sh
sbatch --wait ${sbatch_args} -w ${node} /tmp/scription.sh
wait

cat sbatch_stdout.log >&1
Expand All @@ -83,5 +84,5 @@ cat sbatch_stderr.log >&2
# Clean up
if [ "${cleanup}" -eq "1" ]; then
rm sbatch_std{out,err}.log
rm /tmp/bash_script.sh
rm /tmp/scription.sh
fi