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22 followers · 14 following
  • University of California, Davis
  • Davis, CA

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Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: Pull Sharkx2Achievement: YOLO

Achievements

Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: Pull Sharkx2Achievement: YOLO

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ccbaumler/README.md

Welcome!

Profile  •  GitHub  •  Twitter  •  LinkedIn  •  Mail  •  Blog
Typing SVG

(Above was generated with denvercoder1/readme-typing-svg)

About

Focused on bioinformatically deriving biomedical-relevant answers from public data in the population health field. I find some purpose in helping and mentoring others. Broadly, I aim to eloquently teach topics that are esoteric and under-taught.

Current projects

  1. Developing software for low resource peta-byte scale pangenomic analysis.
  2. Discovery and re-discovery of genomic and metabolomic biomarkers in case verse control studies.
  3. Teaching inclusive, equitable, and sustainable practices in scholarly knowledge management.
    Example instructional workflow

Recent GitHub Activity

My latest open-source contributions:

  1. 🗣 Commented on #37 in dib-lab/sourmash_plugin_pangenomics
  2. 💪 Opened PR #37 in dib-lab/sourmash_plugin_pangenomics
  3. 🚀 Published release v0.4.0 in dib-lab/sourmash_plugin_pangenomics
  4. 🔒 Closed issue #35 in dib-lab/sourmash_plugin_pangenomics
  5. 🎉 Merged PR #36 in dib-lab/sourmash_plugin_pangenomics

GitHub Statistics

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  1. analyzing-lit analyzing-lit Public

    A quarto presentation on distilling scientific literature with Bibliometric analysis and R tools

    TeX 6

  2. managing-lit managing-lit Public

    A quarto presentation on managing scientific literature with Zotero

    R 5

  3. centralizing-lit centralizing-lit Public

    A presentation on creating a scientific feed aggregator

    HTML 2

  4. CV-template CV-template Public template

    A template to create a Data Driven CV or Resume with R, YAML, LaTeX, and Github Actions

    TeX 1 1

  5. 2025-bioinfo-workshop 2025-bioinfo-workshop Public

    The first iteration of a Bioinformatic and Computational Pedagogy workshop for Highschool STEM instructors.

    HTML 1

  6. sourmash_plugin_pangenomics sourmash_plugin_pangenomics Public

    Forked from dib-lab/sourmash_plugin_pangenomics

    tools for sourmash-based pangenome analyses

    Python