Some programs for downstream analysis of CaptureC data. All can be compiled using the same Makefile with the command 'make'.
Program to measure any bias in the direction of interactions from a set of CaptureC interaction profiles. Gives a value for each profile/probe. Previously I think I called this asymmetry.
Program to generate the average number of reads as a function of separation from a set of CaptureC interaction profiles. This is done with logarithmically spaced bins and also calculates an error.
Program which calculates the ratio between local and long ranged interactions from a set of CaptureC interaction profiles. Gives a value for each profile/probe.