Add MiniscopeImagingExtractor

[weiglszonja]

Add extractor for the Miniscope format:

• MiniscopeImagingExtractor takes a folder_path that points to the main folder where the microscope and behavior video subfolders are located.

The expected folder structure for Miniscope V3 recordings, based on the example session received from the Tye lab, is organized as follows:

• C6-J588_Disc5/ (main folder)
  • 15_03_28/ (subfolder corresponding to the recording time)
    • Miniscope/ (subfolder containing the microscope video stream)
      • 0.avi (file containing the microscope video)
      • metaData.json (file containing the metadata for the microscope device)

[CodyCBakerPhD]

Mostly looks good; is there an example file to share yet?

[CodyCBakerPhD]

Not seeing any more dependency conflicts in 3.8, just testing errors

[CodyCBakerPhD]

From meeting: dropping 3.7 here

@weiglszonja Can you try adding 3.11 in a follow-up just to see if it works?

[CodyCBakerPhD]

@weiglszonja Just checked the latest example file

The OnePhotonSeries data field is still float64

[weiglszonja]

@CodyCBakerPhD Thanks for checking the file, turned out I was using an roiextractors version the commit before I fixed the data type issue.
The example file has been replaced, now it is showing up as uint8 values.

[codecov]

Codecov Report

Merging #225 (4b98133) into main (062f69e) will increase coverage by 0.68%.
The diff coverage is 98.52%.

❗ Current head 4b98133 differs from pull request most recent head 2a19ed3. Consider uploading reports for the commit 2a19ed3 to get more accurate results

@@            Coverage Diff             @@
##             main     #225      +/-   ##
==========================================
+ Coverage   75.45%   76.14%   +0.68%     
==========================================
  Files          35       37       +2     
  Lines        2514     2582      +68     
==========================================
+ Hits         1897     1966      +69     
+ Misses        617      616       -1     

Flag	Coverage Δ
unittests	76.14% <98.52%> (+0.68%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
...scopeimagingextractor/miniscopeimagingextractor.py	98.48% <98.48%> (ø)
src/roiextractors/extractorlist.py	100.00% <100.00%> (ø)
...s/extractors/miniscopeimagingextractor/__init__.py	100.00% <100.00%> (ø)

... and 1 file with indirect coverage changes

[CodyCBakerPhD]

Awesome! Thanks for all the work on this