References

Turing resources

• The Turing Way materials: https://the-turing-way.netlify.app/welcome
• RSE4DataScience: https://github.com/alan-turing-institute/RSE4DataScience18
• https://alan-turing-institute.github.io/rds-course/modules/m1/1.1-WhatIsDataScience.html
• RDS course - under development: https://github.com/alan-turing-institute/rds-course
• Data Science Skills: https://github.com/alan-turing-institute/DataScienceSkills
• RSE Summer School: https://github.com/alan-turing-institute/DH-RSE-Summer-School

Carpentries Resources

• Genomics Lessons: https://datacarpentry.org/lessons/#genomics-workshop
• Ecology Lessons: https://datacarpentry.org/lessons/#ecology-workshop

Current incubators, selected projects that deal with ML

• https://carpentries-incubator.github.io/ml4bio-workshop/
• https://carpentries-incubator.github.io/machine-learning-novice-python/
• https://carpentries-incubator.github.io/machine-learning-novice-sklearn/
• http://datascibc.org/Data-Science-for-Docs/
• https://carpentries-incubator.github.io/machine-learning-librarians-archivists/
• https://carpentries-incubator.github.io/bioc-intro/

Packaging and publishing

• https://carpentries-incubator.github.io/introduction-to-conda-for-data-scientists/
• https://carpentries-incubator.github.io/python-packaging-publishing/

different levels of cloud computing and HPC training materials

• http://www.hpc-carpentry.org/
• https://carpentries-incubator.github.io/hpc-intro/

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Other related courses

• RDA-CODATA Summer School: https://github.com/CODATA-RDA-DataScienceSchools (Check with Patricia H. and DCC)
• EMBL-EBI resources: https://competency.ebi.ac.uk/
  • The UX aspect of this resource: https://twitter.com/EBItraining/status/1427197636730306563?s=20
  • Open, Data-driven Science for Decision Makers](https://github.com/JasonJWilliamsNY/openscience_for_decisionmakers)
  • https://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-python/
• Data science in Python: https://training.csx.cam.ac.uk/bioinformatics/event/3748813
• API and biocuration: https://github.com/malvikasharan/2019-Biocuration-Module-2
• API: EBI version of databases - proteins Features: localization, pathways, intact (do two proteins interact?) Also check resources from: https://softwaresaved.github.io/python-intermediate-development/
• Foundations of Open Science Skills 2021
• Markowetz, F. (2017). All biology is computational biology. PLoS Biol., 15(3), e2002050. doi: 10.1371/journal.pbio.2002050).
• EOSC-Pillar RDM training catalogue, potentially anything here is relevant (The Turing Way is listed there)