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Introduction to Systems Biology - Project

Replication project integrating ODE models in R.

For the original paper, see Simulations of an impulsive model for the growth of fruit trees.

Table of contents

Installation

NOTE: Installation is based on an Ubuntu (Linux) environment. For installations regarding a different OS, please look up the appropriate guide for your environment: CRAN Mirrors

Run the following lines (if you are on root, remove sudo):

sudo apt update -qq
sudo apt install --no-install-recommends software-properties-common dirmngr
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
sudo apt install --no-install-recommends r-base

Packages

Installation of the packages can be done in an R console with the install.packages() function.

* This package is not available via CRAN. Follow the link for installation.

Files

The Final directory contains all the files for the final report. The directories named with Week contain the assignments accordingly.

Links

Support

To report problems, open an issue on Github.

About

Project Year2, Period4

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