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protocol and seq_type are different

Status: Open.

#58 In cancerit/cgpCaVEManWrapper;

· davidrajones opened on Mar 24, 2022

if -index 1 is passed with -p flag only one split file is flagged

bug

Status: Open.

#55 In cancerit/cgpCaVEManWrapper;

· jsmedmar opened on Aug 11, 2020

arg default doesn't match cli help: read-count

Status: Open.

#53 In cancerit/cgpCaVEManWrapper;

· keiranmraine opened on Aug 7, 2020

algorithm write up messed up

Status: Open.

#49 In cancerit/cgpCaVEManWrapper;

· keiranmraine opened on Apr 24, 2020

Misleading variable in docker file

Status: Open.

#45 In cancerit/cgpCaVEManWrapper;

· keiranmraine opened on Nov 22, 2019

flagging, species name differences

Status: Open.

#41 In cancerit/cgpCaVEManWrapper;

· lucystebbings opened on May 10, 2019

caveman.pl - Undocumented option -x/-exclude

Status: Open.

#40 In cancerit/cgpCaVEManWrapper;

· keiranmraine opened on Apr 30, 2019