Skip to content

v1.4.1 - Allow forced completion
Compare
Choose a tag to compare
@keiranmraine keiranmraine released this 23 Oct 13:23
· 299 commits to master since this release
v1.4.1
1755046

It is now possible to have this complete even when ASCAT fails to find a solution. This is primarily in place to allow dependent processes to continue.

Adding -f results in a failed analysis reporting a normal contamination of 30%, tumour copynumber or 5/2 and normal copynumber of 2/1. These are the default values we use for CaVEMan when no copynumber is available.

Also fixes an issue in converting the raw copynumber output to VCF, please ensure that you update cgpVcf to at least version 1.2.2

Assets 2
Loading