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Prevent memory explosion in assembly #7

Merged
merged 5 commits into from
Dec 16, 2014
Merged

Prevent memory explosion in assembly #7

merged 5 commits into from
Dec 16, 2014

Commits on Dec 11, 2014

  1. Merge pull request #5 from cancerit/master 

    Master - bring dev in sync
    @keiranmraine
    keiranmraine committed Dec 11, 2014
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  2. Prevent pulling reads from high depth regions during assembly and fix… 

    …ed maxinsert
    @keiranmraine
    keiranmraine committed Dec 11, 2014
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Commits on Dec 15, 2014

  1. pre-filter out high depth before grouping

    @keiranmraine
    keiranmraine committed Dec 15, 2014
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Commits on Dec 16, 2014

  1. Now filter out reads overlapping high depth regions and handle insert… 

    … size hen not available in the BAM file correctly, release version 2.1.0
    @keiranmraine
    keiranmraine committed Dec 16, 2014
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  2. Merge pull request #6 from cancerit/assemble_region_chk 

    Assemble region chk
    @keiranmraine
    keiranmraine committed Dec 16, 2014
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