This is a Java implementation of the SpringSaLaD algorithm, which is a spatially resolved, stochastic simulation algorithm for biochemical systems. The algorithm is based on the Langevin equation, and is implemented in a particle-based framework.
The underlying solver is found at https://github.com/cam-center/LangevinNoVis01.
Website: https://vcell.org/ssalad
The algorithm is described in "SpringSaLaD: A Spatial, Particle-Based Biochemical Simulation Platform with Excluded Volume" by Paul J Michalski and Leslie M Loew.
SpringSaLaD 2.4.2 for macOS (Intel and Apple Silicon), Linux, Windows
https://github.com/cam-center/SpringSaLaD/releases/
Requirements
- Java 17
- Maven
mvn clean install dependency:copy-dependencies