r659: for C++ compatibility

bwa-mem2 · Jan 19, 2018 · 543fa12 · 543fa12
1 parent af1a871
commit 543fa12
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Showing 6 changed files with 7 additions and 3 deletions.
diff --git a/bseq.c b/bseq.c
@@ -2,6 +2,7 @@
 #include <stdio.h>
 #include <stdlib.h>
 #include <assert.h>
+#define __STDC_LIMIT_MACROS
 #include "bseq.h"
 #include "kvec.h"
 #include "kseq.h"

diff --git a/index.c b/index.c
@@ -7,6 +7,7 @@
 #endif
 #include <fcntl.h>
 #include <stdio.h>
+#define __STDC_LIMIT_MACROS
 #include "kthread.h"
 #include "bseq.h"
 #include "minimap.h"

diff --git a/kthread.c b/kthread.c
@@ -2,6 +2,7 @@
 #include <stdlib.h>
 #include <limits.h>
 #include <stdint.h>
+#include "kthread.h"
 
 #if (defined(WIN32) || defined(_WIN32)) && defined(_MSC_VER)
 #define __sync_fetch_and_add(ptr, addend)     _InterlockedExchangeAdd((void*)ptr, addend)

diff --git a/main.c b/main.c
@@ -6,7 +6,7 @@
 #include "mmpriv.h"
 #include "getopt.h"
 
-#define MM_VERSION "2.7-r658-dirty"
+#define MM_VERSION "2.7-r659-dirty"
 
 #ifdef __linux__
 #include <sys/resource.h>

diff --git a/misc.c b/misc.c
@@ -1,4 +1,4 @@
-#include "minimap.h"
+#include "mmpriv.h"
 
 int mm_verbose = 1;
 int mm_dbg_flag = 0;

diff --git a/sketch.c b/sketch.c
@@ -2,8 +2,9 @@
 #include <stdlib.h>
 #include <assert.h>
 #include <string.h>
+#define __STDC_LIMIT_MACROS
 #include "kvec.h"
-#include "minimap.h"
+#include "mmpriv.h"
 
 unsigned char seq_nt4_table[256] = {
 	0, 1, 2, 3,  4, 4, 4, 4,  4, 4, 4, 4,  4, 4, 4, 4,