Computational identification of surface markers for isolating distinct subpopulations from heterogeneous cancer cell populations

This is a set of notebooks/scripts used to process single-cell data and find surface markers for the paper Computational identification of surface markers for isolating distinct subpopulations from heterogeneous cancer cell populations. We also released a package for this called clusterCleaver with more instructions at https://github.com/brocklab/clusterCleaver.

An environment for running these scripts can be created using environment.yml.

Processed data available upon request.