Use fallback validation to OLS for taxon ID (SCP-6070) #402
+43
−3
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BACKGROUND & CHANGES
This update adds fallback validation via OLS for taxon IDs not found in the minified list. This was brought about by a user adding mayfly (Cloeon dipterum, NCBI Taxonomy ID: 197152) data. Before, this data would not validate as the ID does not exist in our cache, and the user was blocked from adding data. Now, this data will validate server-side.
More work is needed to enable this in CSFV as we do not have a mechanism for doing OLS validation.
MANUAL TESTING
ingest/validationdirectory: