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Fix vcf header def for DP #142

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Fix vcf header def for DP #142

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2 changes: 1 addition & 1 deletion src/main/scala/org/broadinstitute/pilon/Vcf.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -62,7 +62,7 @@ class Vcf(val file: File, val contigsWithSizes: List[(String, Int)] = Nil) {
writer.println("##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description=\"Imprecise change from local reassembly (ALT contains Ns)\">")
writer.println("##FORMAT=<ID=GT,Number=1,Type=String,Description=\"Genotype\">")
writer.println("##FORMAT=<ID=AD,Number=.,Type=String,Description=\"Allelic depths for the ref and alt alleles in the order listed\">")
writer.println("##FORMAT=<ID=DP,Number=1,Type=String,Description=\"Approximate read depth; some reads may have been filtered\">")
writer.println("##FORMAT=<ID=DP,Number=1,Type=Integer,Description=\"Approximate read depth; some reads may have been filtered\">")
writer.println("##ALT=<ID=DUP,Description=\"Possible segmental duplication\">")
writer.println("#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE")
}
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